Difference between revisions of "YwrB"
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 591 bp, 197 aa | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 591 bp, 197 aa | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[chrS]]'', ''[[ywrA]]'' |
|- | |- | ||
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36120 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36120 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36120 DNA_with_flanks] | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36120 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36120 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36120 DNA_with_flanks] | ||
| Line 45: | Line 45: | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | + | {{SubtiWiki regulon|[[ChrS regulon]]}} | |
=The gene= | =The gene= | ||
| Line 105: | Line 105: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[ywrB]]-[[ywrA]]'' {{PubMed| | + | * '''Operon:''' ''[[chrS]]-[[ywrB]]-[[ywrA]]'' {{PubMed|22383849}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywrB_3721415_3722008_1 ywrB] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywrB_3721415_3722008_1 ywrB] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|23989926}} |
* '''Regulation:''' | * '''Regulation:''' | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[ChrS]]: transcription repression {{PubMed|23989926}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 136: | Line 137: | ||
=References= | =References= | ||
| − | + | <pubmed> 19581367 22383849 22900751 23989926</pubmed> | |
| − | <pubmed> 19581367 </pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 09:14, 2 September 2013
- Description: subunit of chromate exporter (with YwrA)
| Gene name | ywrB |
| Synonyms | chr3N |
| Essential | no |
| Product | chromate exporter |
| Function | chromate detoxification |
| Gene expression levels in SubtiExpress: ywrB | |
| Interactions involving this protein in SubtInteract: YwrB | |
| MW, pI | 20 kDa, 9.944 |
| Gene length, protein length | 591 bp, 197 aa |
| Immediate neighbours | chrS, ywrA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transporters/ other, resistance against toxic metals, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU36120
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane PubMed
Database entries
- Structure:
- UniProt: O05216
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Esther Aguilar-Barajas, Selene Jacobo-Arreola, Luis A Verduzco-Rosas, Rafael Jiménez-Mejía, Martha I Ramírez-Díaz, Adriana Julián-Sánchez, Héctor Riveros-Rosas, Carlos Cervantes
An Lrp-type transcriptional regulator controls expression of the Bacillus subtilis chromate transporter.
Antonie Van Leeuwenhoek: 2013, 104(6);941-8
[PubMed:23989926]
[WorldCat.org]
[DOI]
(I p)
Rene Martínez-Valencia, Guadalupe Reyes-Cortés, Martha I Ramírez-Díaz, Héctor Riveros-Rosas, Carlos Cervantes
Antiparallel membrane topology of paired short-chain chromate transport proteins in Bacillus subtilis.
FEMS Microbiol Lett: 2012, 336(2);113-21
[PubMed:22900751]
[WorldCat.org]
[DOI]
(I p)
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849]
[WorldCat.org]
[DOI]
(I p)
Amada Díaz-Magaña, Esther Aguilar-Barajas, Rafael Moreno-Sánchez, Martha I Ramírez-Díaz, Héctor Riveros-Rosas, Eréndira Vargas, Carlos Cervantes
Short-chain chromate ion transporter proteins from Bacillus subtilis confer chromate resistance in Escherichia coli.
J Bacteriol: 2009, 191(17);5441-5
[PubMed:19581367]
[WorldCat.org]
[DOI]
(I p)
