Difference between revisions of "YpsC"
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** YpsC interacts with the [[RNA polymerase]] {{PubMed|21710567}} | ** YpsC interacts with the [[RNA polymerase]] {{PubMed|21710567}} | ||
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=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ypsC_2330075_2331232_-1 ypsC] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ypsC_2330075_2331232_-1 ypsC] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
Revision as of 19:52, 7 July 2013
- Description: similar to SAM-dependent 23S rRNA methyltransferase
| Gene name | ypsC |
| Synonyms | |
| Essential | no |
| Product | 23S rRNA methyltransferase |
| Function | rRNA modification |
| Gene expression levels in SubtiExpress: ypsC | |
| MW, pI | 43 kDa, 8.011 |
| Gene length, protein length | 1155 bp, 385 aa |
| Immediate neighbours | ypzG, rnpB |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU22170
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- YpsC interacts with the RNA polymerase PubMed
Database entries
- Structure:
- UniProt: P50840
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Olivier Delumeau, François Lecointe, Jan Muntel, Alain Guillot, Eric Guédon, Véronique Monnet, Michael Hecker, Dörte Becher, Patrice Polard, Philippe Noirot
The dynamic protein partnership of RNA polymerase in Bacillus subtilis.
Proteomics: 2011, 11(15);2992-3001
[PubMed:21710567]
[WorldCat.org]
[DOI]
(I p)
Dmitry V Lesnyak, Petr V Sergiev, Alexey A Bogdanov, Olga A Dontsova
Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.
J Mol Biol: 2006, 364(1);20-5
[PubMed:17010378]
[WorldCat.org]
[DOI]
(P p)
