Difference between revisions of "NagR"

From SubtiWiki
Jump to: navigation, search
Line 139: Line 139:
  
 
=References=
 
=References=
'''Additional publications:''' {{PubMed|21602348}}
+
<pubmed>19342794,20047956 16207374 21602348 23667565</pubmed>
<pubmed>19342794,20047956 16207374</pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:41, 24 May 2013

Gene name nagR
Synonyms yvoA
Essential no
Product transcriptional regulator (GntR family)
Function probably regulator of the putative nagA-nagB-yvoA operon
Gene expression levels in SubtiExpress: nagR
Metabolic function and regulation of this protein in SubtiPathways:
Sugar catabolism, Murein recycling
MW, pI 27 kDa, 6.768
Gene length, protein length 729 bp, 243 aa
Immediate neighbours nagB, yvnB
Sequences Protein DNA DNA_with_flanks
Genetic context
YvoA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
NagR expression.png















Categories containing this gene/protein

utilization of specific carbon sources, transcription factors and their control

This gene is a member of the following regulons

NagR regulon

The NagR regulon:

The gene

Basic information

  • Locus tag: BSU35030

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: transcription repression of nagP and of the putative nagA-nagB-nagR operon in the absence of N-acetylglycosamine PubMed, weak repression of yflG PubMed
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information: K(D) for N-acetylglucosamine-6-phosphate: 1 mM PubMed
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
    • N-acetylglucosamine-6-phosphate acts as the molecular inducer PubMed
    • glucosamine-6-phosphate acts as the molecular inducerPubMed

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced in the presence of N-acetylglucosamine (NagR) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Isabelle Gaugué, Jacques Oberto, Harald Putzer, Jacqueline Plumbridge
The use of amino sugars by Bacillus subtilis: presence of a unique operon for the catabolism of glucosamine.
PLoS One: 2013, 8(5);e63025
[PubMed:23667565] [WorldCat.org] [DOI] (I e)

Ralph Bertram, Sébastien Rigali, Natalie Wood, Andrzej T Lulko, Oscar P Kuipers, Fritz Titgemeyer
Regulon of the N-acetylglucosamine utilization regulator NagR in Bacillus subtilis.
J Bacteriol: 2011, 193(14);3525-36
[PubMed:21602348] [WorldCat.org] [DOI] (I p)

Marcus Resch, Emile Schiltz, Fritz Titgemeyer, Yves A Muller
Insight into the induction mechanism of the GntR/HutC bacterial transcription regulator YvoA.
Nucleic Acids Res: 2010, 38(7);2485-97
[PubMed:20047956] [WorldCat.org] [DOI] (I p)

Marcus Resch, Heide Marie Roth, Mathias Kottmair, Madhumati Sevvana, Ralph Bertram, Fritz Titgemeyer, Yves A Muller
Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of YvoA from Bacillus subtilis.
Acta Crystallogr Sect F Struct Biol Cryst Commun: 2009, 65(Pt 4);410-4
[PubMed:19342794] [WorldCat.org] [DOI] (I p)

CongHui You, HongYan Lu, Agnieszka Sekowska, Gang Fang, YiPing Wang, Anne-Marie Gilles, Antoine Danchin
The two authentic methionine aminopeptidase genes are differentially expressed in Bacillus subtilis.
BMC Microbiol: 2005, 5;57
[PubMed:16207374] [WorldCat.org] [DOI] (I e)