Difference between revisions of "YubB"

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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31150 yubB]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31150 yubB]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall]'''
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=yubB yubB]'''
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 7.902   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 7.902   

Revision as of 11:32, 7 January 2014

  • Description: minor undecaprenyl pyrophosphate phosphatase

Gene name yubB
Synonyms uppP
Essential no
Product minor undecaprenyl pyrophosphate phosphatase
Function unknown
Gene expression levels in SubtiExpress: yubB
Metabolic function and regulation of this protein in SubtiPathways:
yubB
MW, pI 30 kDa, 7.902
Gene length, protein length 828 bp, 276 aa
Immediate neighbours trnSL-Ala1, yubA
Sequences Protein DNA DNA_with_flanks
Genetic context
YubB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YubB expression.png



















Categories containing this gene/protein

membrane proteins, poorly characterized/ putative enzymes

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU31150

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Undecaprenyl diphosphate + H2O = undecaprenyl phosphate + phosphate (according to Swiss-Prot)
  • Protein family: uppP family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

  • YubB seems to be a minor undecaprenyl pyrophosphate phosphatase, the major enzyme is BcrC PubMed

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Takashi Inaoka, Kozo Ochi
Undecaprenyl pyrophosphate involvement in susceptibility of Bacillus subtilis to rare earth elements.
J Bacteriol: 2012, 194(20);5632-7
[PubMed:22904278] [WorldCat.org] [DOI] (I p)

Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711] [WorldCat.org] [DOI] (I p)