Difference between revisions of "YrrB"
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 618 bp, 206 aa | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 618 bp, 206 aa | ||
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| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[recD2]]'', ''[[trmU]]'' |
|- | |- | ||
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU27490 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU27490 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU27490 DNA_with_flanks] | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU27490 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU27490 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU27490 DNA_with_flanks] | ||
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=== Additional information=== | === Additional information=== | ||
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=The protein= | =The protein= | ||
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' contains a tetratricopeptide repeat (TPR) domain {{PubMed|17624311}} | + | * '''[[Domains]]:''' contains a tetratricopeptide repeat (TPR) domain {{PubMed|17624311}} |
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrrB_2808707_2809327_-1 yrrB] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrrB_2808707_2809327_-1 yrrB] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
Revision as of 19:09, 21 January 2014
- Description: unknown
| Gene name | yrrB |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: yrrB | |
| MW, pI | 22 kDa, 4.328 |
| Gene length, protein length | 618 bp, 206 aa |
| Immediate neighbours | recD2, trmU |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU27490
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- UniProt: O34452
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Dohyun Han, Jongkil Oh, Kyunggon Kim, Hyosun Lim, Youngsoo Kim
Crystal structure of YrrB: a TPR protein with an unusual peptide-binding site.
Biochem Biophys Res Commun: 2007, 360(4);784-90
[PubMed:17624311]
[WorldCat.org]
[DOI]
(P p)
