Difference between revisions of "YhgD"

From SubtiWiki
Jump to: navigation, search
Line 1: Line 1:
* '''Description:''' similar to transcriptional regulator (TetR family) <br/><br/>
+
* '''Description:''' similar to transcriptional regulator ([[TetR family]]) <br/><br/>
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
Line 34: Line 34:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
Line 71: Line 67:
 
* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
* '''Protein family:'''
+
* '''Protein family:''' [[TetR family]]
  
 
* '''Paralogous protein(s):'''
 
* '''Paralogous protein(s):'''
Line 109: Line 105:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhgD_1089755_1090330_1 yhgD] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhgD_1089755_1090330_1 yhgD] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
+
* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 136: Line 132:
  
 
=References=
 
=References=
 
+
==Reviews==
 +
<pubmed>24006471 </pubmed>
 +
==Original publications==
 +
<pubmed> </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:37, 6 September 2013

  • Description: similar to transcriptional regulator (TetR family)

Gene name yhgD
Synonyms yixD
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yhgD
MW, pI 21 kDa, 7.238
Gene length, protein length 573 bp, 191 aa
Immediate neighbours hemY, yhgE
Sequences Protein DNA DNA_with_flanks
Genetic context
YhgD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YhgD expression.png















Categories containing this gene/protein

transcription factors and their control

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU10150

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Leslie Cuthbertson, Justin R Nodwell
The TetR family of regulators.
Microbiol Mol Biol Rev: 2013, 77(3);440-75
[PubMed:24006471] [WorldCat.org] [DOI] (I p)

Original publications