Difference between revisions of "HemY"

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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU10140&redirect=T BSU10140]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/hemEHY.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/hemEHY.html]
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU10140&redirect=T BSU10140]
  
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=3I6D 3I6D]
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=3I6D 3I6D]

Revision as of 13:20, 2 April 2014

  • Description: protoporphyrinogen IX oxidase

Gene name hemY
Synonyms hemG
Essential no
Product protoporphyrinogen IX oxidase
Function heme biosynthesis
Gene expression levels in SubtiExpress: hemY
MW, pI 51 kDa, 8.042
Gene length, protein length 1410 bp, 470 aa
Immediate neighbours hemH, yhgD
Sequences Protein DNA DNA_with_flanks
Genetic context
HemY context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
HemY expression.png
























Categories containing this gene/protein

biosynthesis of cofactors

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU10140

Expression

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Protoporphyrinogen-IX + 3 O2 = protoporphyrin-IX + 3 H2O2 (according to Swiss-Prot)
  • Protein family: protoporphyrinogen oxidase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ge-Fei Hao, Yang Zuo, Sheng-Gang Yang, Guang-Fu Yang
Protoporphyrinogen oxidase inhibitor: an ideal target for herbicide discovery.
Chimia (Aarau): 2011, 65(12);961-9
[PubMed:22273380] [WorldCat.org] [DOI] (P p)

Xiaohong Qin, Lu Sun, Xin Wen, Xue Yang, Ying Tan, Hao Jin, Qiongyao Cao, Weihong Zhou, Zhen Xi, Yuequan Shen
Structural insight into unique properties of protoporphyrinogen oxidase from Bacillus subtilis.
J Struct Biol: 2010, 170(1);76-82
[PubMed:19944166] [WorldCat.org] [DOI] (I p)

Lu Sun, Xin Wen, Ying Tan, Heyang Li, Xing Yang, Yuefang Zhao, Baifan Wang, Qiongyao Cao, Congwei Niu, Zhen Xi
Site-directed mutagenesis and computational study of the Y366 active site in Bacillus subtilis protoporphyrinogen oxidase.
Amino Acids: 2009, 37(3);523-30
[PubMed:19266155] [WorldCat.org] [DOI] (I p)

M Hansson, M C Gustafsson, C G Kannangara, L Hederstedt
Isolated Bacillus subtilis HemY has coproporphyrinogen III to coproporphyrin III oxidase activity.
Biochim Biophys Acta: 1997, 1340(1);97-104
[PubMed:9217019] [WorldCat.org] [DOI] (P p)

M Hansson, L Hederstedt
Bacillus subtilis HemY is a peripheral membrane protein essential for protoheme IX synthesis which can oxidize coproporphyrinogen III and protoporphyrinogen IX.
J Bacteriol: 1994, 176(19);5962-70
[PubMed:7928957] [WorldCat.org] [DOI] (P p)

M Hansson, L Hederstedt
Cloning and characterization of the Bacillus subtilis hemEHY gene cluster, which encodes protoheme IX biosynthetic enzymes.
J Bacteriol: 1992, 174(24);8081-93
[PubMed:1459957] [WorldCat.org] [DOI] (P p)