Difference between revisions of "YdgF"
| Line 65: | Line 65: | ||
* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | * '''Protein family:''' secondary amino acid transporter | + | * '''Protein family:''' |
| + | ** secondary amino acid transporter | ||
| + | ** amino acid, polyamine, organocation (APC) family of transporters, [http://www.tcdb.org/search/result.php?tc=2.A.3 TC 2.A.3] | ||
* '''Paralogous protein(s):''' [[AapA]], [[GabP]], [[HutM]], [[RocC]], [[RocE]], [[YbgF]], [[YbxG]], [[YtnA]], [[YvbW]] | * '''Paralogous protein(s):''' [[AapA]], [[GabP]], [[HutM]], [[RocC]], [[RocE]], [[YbgF]], [[YbxG]], [[YtnA]], [[YvbW]] | ||
| Line 94: | Line 96: | ||
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU05620] | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU05620] | ||
| − | * ''' | + | * '''[http://www.tcdb.org/ T.C.] number:''' [http://www.tcdb.org/search/result.php?tc=2.A.3.1.16 2.A.3.1.16] |
=== Additional information=== | === Additional information=== | ||
Revision as of 12:51, 28 November 2013
- Description: similar to amino acid permease
| Gene name | ydgF |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: ydgF | |
| MW, pI | 50 kDa, 9.337 |
| Gene length, protein length | 1374 bp, 458 aa |
| Immediate neighbours | vmlR, dinB |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transporters/ other, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU05620
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- secondary amino acid transporter
- amino acid, polyamine, organocation (APC) family of transporters, TC 2.A.3
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: P96704
- KEGG entry: [2]
- T.C. number: 2.A.3.1.16
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796]
[WorldCat.org]
[DOI]
(I p)
