Difference between revisions of "KdgR"
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[kdgK]]'', ''[[kduI]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[kdgK]]'', ''[[kduI]]'' | ||
|- | |- | ||
| − | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22120 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22120 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22120 | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22120 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22120 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22120 DNA_with_flanks] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:kdgR_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:kdgR_context.gif]] | ||
Revision as of 10:32, 14 May 2013
- Description: transcriptional repressor of the pectin utilization operon (LacI family)
| Gene name | kdgR |
| Synonyms | |
| Essential | no |
| Product | transcriptional repressor of the pectin utilization operon (LacI family) |
| Function | regulation of galacturonic acid utilization |
| Gene expression levels in SubtiExpress: kdgR | |
| MW, pI | 37 kDa, 8.824 |
| Gene length, protein length | 1017 bp, 339 aa |
| Immediate neighbours | kdgK, kduI |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of specific carbon sources, transcription factors and their control
This gene is a member of the following regulons
The KdgR regulon:
The gene
Basic information
- Locus tag: BSU22120
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: LacI family
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P50844
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Bogumiła C Marciniak, Monika Pabijaniak, Anne de Jong, Robert Dűhring, Gerald Seidel, Wolfgang Hillen, Oscar P Kuipers
High- and low-affinity cre boxes for CcpA binding in Bacillus subtilis revealed by genome-wide analysis.
BMC Genomics: 2012, 13;401
[PubMed:22900538]
[WorldCat.org]
[DOI]
(I e)
Jer-Sheng Lin, Gwo-Chyuan Shaw
Regulation of the kduID operon of Bacillus subtilis by the KdgR repressor and the ccpA gene: identification of two KdgR-binding sites within the kdgR-kduI intergenic region.
Microbiology (Reading): 2007, 153(Pt 3);701-710
[PubMed:17322190]
[WorldCat.org]
[DOI]
(P p)
Petar Pujic, Rozenn Dervyn, Alexei Sorokin, S Dusko Ehrlich
The kdgRKAT operon of Bacillus subtilis: detection of the transcript and regulation by the kdgR and ccpA genes.
Microbiology (Reading): 1998, 144 ( Pt 11);3111-3118
[PubMed:9846747]
[WorldCat.org]
[DOI]
(P p)
