Difference between revisions of "YngF"
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|style="background:#ABCDEF;" align="center"|'''Function''' || mother cell metabolism, leucine utilization | |style="background:#ABCDEF;" align="center"|'''Function''' || mother cell metabolism, leucine utilization | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18220 yngF] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 7.671 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 7.671 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yngE]]'', ''[[yngG]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yngE]]'', ''[[yngG]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18220 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18220 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18220 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yngF_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yngF_context.gif]] | ||
Revision as of 12:57, 13 May 2013
- Description: methylglutaconyl-CoA hydratase
| Gene name | yngF |
| Synonyms | |
| Essential | no |
| Product | methylglutaconyl-CoA hydratase |
| Function | mother cell metabolism, leucine utilization |
| Gene expression levels in SubtiExpress: yngF | |
| MW, pI | 27 kDa, 7.671 |
| Gene length, protein length | 780 bp, 260 aa |
| Immediate neighbours | yngE, yngG |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of amino acids, sporulation proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU18220
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: 3-methylglutaconyl-CoA --->(S)-3-hydroxy-3-methylglutaryl-CoA PubMed
- Protein family: enoyl-CoA hydratase/isomerase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 3KQF (from B. anthracis)
- UniProt: O34893
- KEGG entry: [3]
- E.C. number: 4.2.1.18
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Tzu-Lin Hsiao, Olga Revelles, Lifeng Chen, Uwe Sauer, Dennis Vitkup
Automatic policing of biochemical annotations using genomic correlations.
Nat Chem Biol: 2010, 6(1);34-40
[PubMed:19935659]
[WorldCat.org]
[DOI]
(I p)
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
Patrick Eichenberger, Shane T Jensen, Erin M Conlon, Christiaan van Ooij, Jessica Silvaggi, José Eduardo González-Pastor, Masaya Fujita, Sigal Ben-Yehuda, Patrick Stragier, Jun S Liu, Richard Losick
The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis.
J Mol Biol: 2003, 327(5);945-72
[PubMed:12662922]
[WorldCat.org]
[DOI]
(P p)
