Difference between revisions of "YlmC"
| Line 1: | Line 1: | ||
| − | * '''Description:''' | + | * '''Description:''' [[sporulation]] protein <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || [[sporulation]] protein |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown | ||
| Line 38: | Line 38: | ||
= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
| − | {{SubtiWiki category|[[proteins | + | {{SubtiWiki category|[[sporulation proteins]]}} |
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | + | {{SubtiWiki regulon|[[SigE regulon]]}}, | |
| + | {{SubtiWiki regulon|[[SpoIIID regulon]]}} | ||
=The gene= | =The gene= | ||
| Line 50: | Line 51: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | * a ''[[ylmC]] [[ymxH]]'' double mutant has a severe [[sporulation]] defect (1% sporulation as compared to the wild type or single mutants), the block is at stage III of [[sporulation]] {{PubMed|23396918}} | ||
=== Database entries === | === Database entries === | ||
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=== Additional information=== | === Additional information=== | ||
| − | |||
| − | |||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylmC_1608919_1609164_1 ylmC] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylmC_1608919_1609164_1 ylmC] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** expressed early during [[sporulation]] in the mother cell ([[SigE]], [[SpoIIID]]) {{PubMed|23396918}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[SpoIIID]]: transcrition repression {{PubMed|23396918}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 133: | Line 135: | ||
=References= | =References= | ||
| − | <pubmed>23123912</pubmed> | + | <pubmed>23123912 23396918 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 09:46, 13 February 2013
- Description: sporulation protein
| Gene name | ylmC |
| Synonyms | |
| Essential | no |
| Product | sporulation protein |
| Function | unknown |
| Gene expression levels in SubtiExpress: ylmC | |
| MW, pI | 8 kDa, 5.635 |
| Gene length, protein length | 243 bp, 81 aa |
| Immediate neighbours | ylmB, ylmD |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU15360
Phenotypes of a mutant
- a ylmC ymxH double mutant has a severe sporulation defect (1% sporulation as compared to the wild type or single mutants), the block is at stage III of sporulation PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s): YmxH
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O31725
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- expressed early during sporulation in the mother cell (SigE, SpoIIID) PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Ana B Abecasis, Mónica Serrano, Renato Alves, Leonor Quintais, José B Pereira-Leal, Adriano O Henriques
A genomic signature and the identification of new sporulation genes.
J Bacteriol: 2013, 195(9);2101-15
[PubMed:23396918]
[WorldCat.org]
[DOI]
(I p)
Bjorn A Traag, Antonia Pugliese, Jonathan A Eisen, Richard Losick
Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis.
J Bacteriol: 2013, 195(2);253-60
[PubMed:23123912]
[WorldCat.org]
[DOI]
(I p)
