Difference between revisions of "CatD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || viability in the presence of catechol | |style="background:#ABCDEF;" align="center"|'''Function''' || viability in the presence of catechol | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08230 catD] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 14 kDa, 10.115 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 14 kDa, 10.115 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfiC]]'', ''[[catE]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfiC]]'', ''[[catE]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08230 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08230 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08230 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yfiD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yfiD_context.gif]] | ||
Revision as of 12:22, 13 May 2013
- Description: essential for viability in the presence of catechol
| Gene name | catD |
| Synonyms | yfiD |
| Essential | no |
| Product | unknown |
| Function | viability in the presence of catechol |
| Gene expression levels in SubtiExpress: catD | |
| MW, pI | 14 kDa, 10.115 |
| Gene length, protein length | 402 bp, 134 aa |
| Immediate neighbours | yfiC, catE |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
resistance against oxidative and electrophile stress, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU08230
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: P54720
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Bui Khanh Chi, Kazuo Kobayashi, Dirk Albrecht, Michael Hecker, Haike Antelmann
The paralogous MarR/DUF24-family repressors YodB and CatR control expression of the catechol dioxygenase CatE in Bacillus subtilis.
J Bacteriol: 2010, 192(18);4571-81
[PubMed:20639328]
[WorldCat.org]
[DOI]
(I p)
Van Duy Nguyen, Carmen Wolf, Ulrike Mäder, Michael Lalk, Peter Langer, Ulrike Lindequist, Michael Hecker, Haike Antelmann
Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in Bacillus subtilis.
Proteomics: 2007, 7(9);1391-408
[PubMed:17407181]
[WorldCat.org]
[DOI]
(P p)
Le Thi Tam, Christine Eymann, Dirk Albrecht, Rabea Sietmann, Frieder Schauer, Michael Hecker, Haike Antelmann
Differential gene expression in response to phenol and catechol reveals different metabolic activities for the degradation of aromatic compounds in Bacillus subtilis.
Environ Microbiol: 2006, 8(8);1408-27
[PubMed:16872404]
[WorldCat.org]
[DOI]
(P p)
