Difference between revisions of "YdaB"
Raphael2215 (talk | contribs) |
|||
| Line 13: | Line 13: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04170 ydaB] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 51 kDa, 4.849 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 51 kDa, 4.849 | ||
| Line 21: | Line 21: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mtlR]]'', ''[[ydaC]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mtlR]]'', ''[[ydaC]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04170 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04170 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04170 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ydaB_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ydaB_context.gif]] | ||
Revision as of 12:09, 13 May 2013
- Description: similar to acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)
| Gene name | ydaB |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: ydaB | |
| MW, pI | 51 kDa, 4.849 |
| Gene length, protein length | 1395 bp, 465 aa |
| Immediate neighbours | mtlR, ydaC |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU04170
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ATP-dependent AMP-binding enzyme family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P96575
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. Mol Microbiol. 2011 81(6): 1459-1473. PubMed:21815947
P N Black, C C DiRusso, A K Metzger, T L Heimert
Cloning, sequencing, and expression of the fadD gene of Escherichia coli encoding acyl coenzyme A synthetase.
J Biol Chem: 1992, 267(35);25513-20
[PubMed:1460045]
[WorldCat.org]
(P p)
