Difference between revisions of "GyrB"
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
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** [[GyrA]]-[[GyrB]] | ** [[GyrA]]-[[GyrB]] | ||
| − | * '''[[Localization]]:''' nucleoid-associated in actively growing cells [http://www.ncbi.nlm.nih.gov/sites/entrez/9539793 PubMed] | + | * '''[[Localization]]:''' |
| + | ** nucleoid-associated in actively growing cells [http://www.ncbi.nlm.nih.gov/sites/entrez/9539793 PubMed] | ||
=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gyrB_4867_6783_1 gyrB] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gyrB_4867_6783_1 gyrB] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed] | + | * '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed] |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
'''Additional references:''' {{PubMed|20870749}} | '''Additional references:''' {{PubMed|20870749}} | ||
| − | <pubmed>17981983 ,9539793 , 2987848 19666507 17320901 20509597 </pubmed> | + | <pubmed>17981983 ,9539793 , 2987848 19666507 17320901 20509597 23475963</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 10:35, 16 March 2013
- Description: DNA gyrase (subunit B)
| Gene name | gyrB |
| Synonyms | novA |
| Essential | yes PubMed |
| Product | DNA gyrase (subunit B) |
| Function | DNA supercoiling, initation of replication cycle and DNA elongation |
| Gene expression levels in SubtiExpress: GyrB | |
| Interactions involving this protein in SubtInteract: GyrB | |
| MW, pI | 71 kDa, 5.378 |
| Gene length, protein length | 1914 bp, 638 aa |
| Immediate neighbours | yaaB, gyrA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
DNA condensation/ segregation, essential genes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU00060
Phenotypes of a mutant
essential PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: ATP-dependent breakage, passage and rejoining of double-stranded DNA (according to Swiss-Prot)
- Protein family: type II topoisomerase family (according to Swiss-Prot)
- Paralogous protein(s): ParE
Extended information on the protein
- Kinetic information:
- Domains:
- Modification: phosphorylated on Ser-400 PubMed
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- nucleoid-associated in actively growing cells PubMed
Database entries
- Structure:
- UniProt: P05652
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information: GyrB is subject to Clp-dependent proteolysis upon glucose starvation PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Dagmar Klostermeier, Biozentrum Basel, Switzerland homepage
Your additional remarks
References
Additional references: PubMed
