Difference between revisions of "YxdJ"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || resistance against toxic peptides | |style="background:#ABCDEF;" align="center"|'''Function''' || resistance against toxic peptides | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39660 yxdJ] |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YxdJ YxdJ] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YxdJ YxdJ] | ||
| Line 24: | Line 24: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxdK]]'', ''[[iolJ]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxdK]]'', ''[[iolJ]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39660 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39660 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39660 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yxdJ_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yxdJ_context.gif]] | ||
Revision as of 14:16, 13 May 2013
- Description: two-component response regulator, regulation of the ABC transporter YxdL-YxdM in response to the cationic antimicrobial peptide, LL-37
| Gene name | yxdJ |
| Synonyms | |
| Essential | no |
| Product | two-component response regulator |
| Function | resistance against toxic peptides |
| Gene expression levels in SubtiExpress: yxdJ | |
| Interactions involving this protein in SubtInteract: YxdJ | |
| MW, pI | 26 kDa, 4.937 |
| Gene length, protein length | 687 bp, 229 aa |
| Immediate neighbours | yxdK, iolJ |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transcription factors and their control, resistance against toxins/ antibiotics, phosphoproteins
This gene is a member of the following regulons
The YxdJ regulon:
The gene
Basic information
- Locus tag: BSU39660
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification: phosphorylated by YxdK on an Asp residue
- Cofactor(s):
- Effectors of protein activity:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: P42421
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
