Difference between revisions of "TuaF"

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|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of teichuronic acid
 
|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of teichuronic acid
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU35560 tuaF]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35560 tuaF]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 4.553   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 4.553   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[tuaG]]'', ''[[tuaE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[tuaG]]'', ''[[tuaE]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15573&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35560 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35560 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35560 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:tuaF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:tuaF_context.gif]]

Revision as of 13:59, 13 May 2013

  • Description: biosynthesis of teichuronic acid

Gene name tuaF
Synonyms yvhF
Essential no
Product unknown
Function biosynthesis of teichuronic acid
Gene expression levels in SubtiExpress: tuaF
MW, pI 24 kDa, 4.553
Gene length, protein length 678 bp, 226 aa
Immediate neighbours tuaG, tuaE
Sequences Protein DNA Advanced_DNA
Genetic context
TuaF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
TuaF expression.png
























Categories containing this gene/protein

cell wall synthesis, biosynthesis of cell wall components, sporulation proteins, membrane proteins

This gene is a member of the following regulons

PhoP regulon, SigF regulon

The gene

Basic information

  • Locus tag: BSU35560

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed early during sporulation in the forespore (SigF) PubMed
    • expressed under conditions of phosphate limitation (PhoP) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Stephanie T Wang, Barbara Setlow, Erin M Conlon, Jessica L Lyon, Daisuke Imamura, Tsutomu Sato, Peter Setlow, Richard Losick, Patrick Eichenberger
The forespore line of gene expression in Bacillus subtilis.
J Mol Biol: 2006, 358(1);16-37
[PubMed:16497325] [WorldCat.org] [DOI] (P p)

Maryam Lahooti, Colin R Harwood
Transcriptional analysis of the Bacillus subtilis teichuronic acid operon.
Microbiology (Reading): 1999, 145 ( Pt 12);3409-3417
[PubMed:10627039] [WorldCat.org] [DOI] (P p)

B Soldo, V Lazarevic, M Pagni, D Karamata
Teichuronic acid operon of Bacillus subtilis 168.
Mol Microbiol: 1999, 31(3);795-805
[PubMed:10048024] [WorldCat.org] [DOI] (P p)

Wei Liu, F Marion Hulett
Comparison of PhoP binding to the tuaA promoter with PhoP binding to other Pho-regulon promoters establishes a Bacillus subtilis Pho core binding site.
Microbiology (Reading): 1998, 144 ( Pt 5);1443-1450
[PubMed:9611818] [WorldCat.org] [DOI] (P p)