Difference between revisions of "RpsD"
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | ||
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− | |style="background:#ABCDEF;" align="center"| '''Essential''' || yes | + | |style="background:#ABCDEF;" align="center"| '''Essential''' || yes {{PubMed|23002217,12682299}} |
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|style="background:#ABCDEF;" align="center"| '''Product''' || [[ribosomal protein]] S4 (BS4) | |style="background:#ABCDEF;" align="center"| '''Product''' || [[ribosomal protein]] S4 (BS4) | ||
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===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
− | essential | + | essential {{PubMed|23002217,12682299}} |
=== Database entries === | === Database entries === | ||
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=References= | =References= | ||
− | + | '''Additional publications:''' {{PubMed|23002217}} | |
<pubmed>1699930,2121712,6420647,1400226,1906866,, 19653700 11489846 </pubmed> | <pubmed>1699930,2121712,6420647,1400226,1906866,, 19653700 11489846 </pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] |
Revision as of 11:29, 26 September 2012
- Description: ribosomal protein
Gene name | rpsD |
Synonyms | |
Essential | yes PubMed |
Product | ribosomal protein S4 (BS4) |
Function | translation |
Gene expression levels in SubtiExpress: rpsD | |
Interactions involving this protein in SubtInteract: RpsD | |
MW, pI | 22 kDa, 10.243 |
Gene length, protein length | 600 bp, 200 aa |
Immediate neighbours | ytrP, tyrS |
Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
translation, essential genes, universally conserved proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU29660
Phenotypes of a mutant
essential PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ribosomal protein S4P family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 1C06 (Geobacillus stearothermophilus)
- UniProt: P21466
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Matthew A Lauber, William E Running, James P Reilly
B. subtilis ribosomal proteins: structural homology and post-translational modifications.
J Proteome Res: 2009, 8(9);4193-206
[PubMed:19653700]
[WorldCat.org]
[DOI]
(P p)
T Inaoka, K Kasai, K Ochi
Construction of an in vivo nonsense readthrough assay system and functional analysis of ribosomal proteins S12, S4, and S5 in Bacillus subtilis.
J Bacteriol: 2001, 183(17);4958-63
[PubMed:11489846]
[WorldCat.org]
[DOI]
(P p)
F J Grundy, T M Henkin
Characterization of the Bacillus subtilis rpsD regulatory target site.
J Bacteriol: 1992, 174(21);6763-70
[PubMed:1400226]
[WorldCat.org]
[DOI]
(P p)
F J Grundy, T M Henkin
The rpsD gene, encoding ribosomal protein S4, is autogenously regulated in Bacillus subtilis.
J Bacteriol: 1991, 173(15);4595-602
[PubMed:1906866]
[WorldCat.org]
[DOI]
(P p)
T M Henkin, G H Chambliss, F J Grundy
Bacillus subtilis mutants with alterations in ribosomal protein S4.
J Bacteriol: 1990, 172(11);6380-5
[PubMed:2121712]
[WorldCat.org]
[DOI]
(P p)
F J Grundy, T M Henkin
Cloning and analysis of the Bacillus subtilis rpsD gene, encoding ribosomal protein S4.
J Bacteriol: 1990, 172(11);6372-9
[PubMed:1699930]
[WorldCat.org]
[DOI]
(P p)
T M Henkin, G H Chambliss
Genetic mapping of a mutation causing an alteration in Bacillus subtilis ribosomal protein S4.
Mol Gen Genet: 1984, 193(2);364-9
[PubMed:6420647]
[WorldCat.org]
[DOI]
(P p)