Difference between revisions of "NudF"
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|style="background:#ABCDEF;" align="center"|'''Function''' || isoprenoid biosynthesis | |style="background:#ABCDEF;" align="center"|'''Function''' || isoprenoid biosynthesis | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU23610 nudF] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 20 kDa, 4.586 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 20 kDa, 4.586 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqxK]]'', ''[[mciZ]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqxK]]'', ''[[mciZ]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU23610 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU23610 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU23610 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:nudF_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:nudF_context.gif]] | ||
Revision as of 13:13, 13 May 2013
- Description: involved in isopentenol (isoprenoid) biosynthesis
| Gene name | nudF |
| Synonyms | yqkG |
| Essential | no |
| Product | unknown |
| Function | isoprenoid biosynthesis |
| Gene expression levels in SubtiExpress: nudF | |
| MW, pI | 20 kDa, 4.586 |
| Gene length, protein length | 555 bp, 185 aa |
| Immediate neighbours | yqxK, mciZ |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU23610
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: ADP-ribose + H2O = AMP + D-ribose 5-phosphate (according to Swiss-Prot)
- Protein family: Nudix hydrolase, NudF subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P54570
- KEGG entry: [2]
- E.C. number: 3.6.1.13
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Sydnor T Withers, Shayin S Gottlieb, Bonny Lieu, Jack D Newman, Jay D Keasling
Identification of isopentenol biosynthetic genes from Bacillus subtilis by a screening method based on isoprenoid precursor toxicity.
Appl Environ Microbiol: 2007, 73(19);6277-83
[PubMed:17693564]
[WorldCat.org]
[DOI]
(P p)
C A Dunn, S F O'Handley, D N Frick, M J Bessman
Studies on the ADP-ribose pyrophosphatase subfamily of the nudix hydrolases and tentative identification of trgB, a gene associated with tellurite resistance.
J Biol Chem: 1999, 274(45);32318-24
[PubMed:10542272]
[WorldCat.org]
[DOI]
(P p)
