Difference between revisions of "DesR"
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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of cold shock expression of des | |style="background:#ABCDEF;" align="center"|'''Function''' || regulation of cold shock expression of des | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU19200 desR] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/DesR DesR] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/DesR DesR] | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[desK]]'', ''[[yocH]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[desK]]'', ''[[yocH]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU19200 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU19200 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU19200 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yocG_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yocG_context.gif]] | ||
Revision as of 13:00, 13 May 2013
- Description: two-component response regulator, regulation of cold shock expression of des
| Gene name | desR |
| Synonyms | yocG |
| Essential | no |
| Product | two-component response regulator |
| Function | regulation of cold shock expression of des |
| Gene expression levels in SubtiExpress: desR | |
| Interactions involving this protein in SubtInteract: DesR | |
| Metabolic function and regulation of this protein in SubtiPathways: Fatty acid degradation | |
| MW, pI | 22 kDa, 4.885 |
| Gene length, protein length | 597 bp, 199 aa |
| Immediate neighbours | desK, yocH |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
lipid metabolism/ other, transcription factors and their control, cold stress proteins, membrane proteins, phosphoproteins
This gene is a member of the following regulons
The DesR regulon:
The gene
Basic information
- Locus tag: BSU19200
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: transcription activation of the des operon when phosphorylated by DesK
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification: phosphorylated by DesK on an Asp residue
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O34723
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- induced by cold shock (18-fold) PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
- Diego de Mendoza, Universidad Nacional de Rosario, Argentine homepage
Your additional remarks
References
