XylB

• Description: xylulokinase
  
  

Gene name	xylB
Synonyms	yncA
Essential	no
Product	xylulokinase
Function	utilization of xylan and xylose
Gene expression levels in SubtiExpress: xylB
Metabolic function and regulation of this protein in SubtiPathways: Sugar catabolism
MW, pI	55 kDa, 6.459
Gene length, protein length	1497 bp, 499 aa
Immediate neighbours	xylA, yncB
Get the DNA and protein sequences (Barbe et al., 2009)
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

CcpA regulon, XylR regulon

The gene

Basic information

• Locus tag: BSU17610

Database entries

• DBTBS entry: [1]

• SubtiList entry: [2]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity: ATP + D-xylulose = ADP + D-xylulose 5-phosphate (according to Swiss-Prot)

• Protein family: FGGY kinase family (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• Structure: 2NLX (from E. coli, 35% identity, 52% similarity) PubMed

• UniProt: P39211

• KEGG entry: [3]

• E.C. number: 2.7.1.17

Expression and regulation

• Operon: xylA-xylB PubMed

• Expression browser: xylB PubMed

• Sigma factor: SigA PubMed

• Regulation:
  • carbon catabolite repression (CcpA) PubMed
  • induction by xylose (XylR) PubMed

• Regulatory mechanism:
  • CcpA: transcription repression PubMed
  • XylR: transcription repression PubMed

• Additional information:

Biological materials

• Mutant: GP1151 (del aphA3) available in Stülke lab
  • 1A719 (no resistance), PubMed, available at BGSC

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

Labs working on this gene/protein

Wolfgang Hillen, Erlangen University, Germany Homepage