Difference between revisions of "YktC"

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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
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* '''[[SubtInteract|Interactions]]:'''
  
* '''Localization:'''
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* '''[[Localization]]:'''
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=suhB_1537441_1538238_1 yktC] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=suhB_1537441_1538238_1 yktC] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 19:44, 3 November 2012

  • Description: unknown

Gene name yktC
Synonyms suhB
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yktC
MW, pI 29 kDa, 5.087
Gene length, protein length 795 bp, 265 aa
Immediate neighbours ykzI, ykzC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YktC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YktC expression.png















Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU14670

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Myo-inositol phosphate + H2O = myo-inositol + phosphate (according to Swiss-Prot)
  • Protein family: inositol monophosphatase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

The gene is annotated in Swiss-Prot and KEGG as myo-inositol-1(or 4)-monophosphatase EC 3.1.3.25. In MetaCyc it is annotated as “similar to myo-inositol-1(or 4)-monophosphatase”. No literature/experimental evidence supporting the annotation is available. PubMed

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Tzu-Lin Hsiao, Olga Revelles, Lifeng Chen, Uwe Sauer, Dennis Vitkup
Automatic policing of biochemical annotations using genomic correlations.
Nat Chem Biol: 2010, 6(1);34-40
[PubMed:19935659] [WorldCat.org] [DOI] (I p)