Difference between revisions of "YbxF"
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| − | * '''Description:''' similar to [[ribosomal protein]] | + | * '''Description:''' similar to [[ribosomal protein]] L7AE family, associated with the ribosome during exponential growth, binds K-turns in [[RNA switch]]es <br/><br/> |
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* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| + | ** binds K-turns in [[RNA switch]]es as the occur in the [[L-box]], the [[S-box]] and the [[T-box]] {{PubMed|22355167}} | ||
* '''Protein family:''' [[ribosomal protein]] L7Ae family (according to Swiss-Prot) | * '''Protein family:''' [[ribosomal protein]] L7Ae family (according to Swiss-Prot) | ||
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=References= | =References= | ||
'''Additional publications:''' {{PubMed|17468242}} | '''Additional publications:''' {{PubMed|17468242}} | ||
| + | <pubmed> 22355167</pubmed> | ||
<pubmed>11948165</pubmed> | <pubmed>11948165</pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:26, 23 February 2012
- Description: similar to ribosomal protein L7AE family, associated with the ribosome during exponential growth, binds K-turns in RNA switches
| Gene name | ybxF |
| Synonyms | ybaB |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Interactions involving this protein in SubtInteract: YbxF | |
| MW, pI | 8 kDa, 9.511 |
| Gene length, protein length | 246 bp, 82 aa |
| Immediate neighbours | rpoC, rpsL |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU01090
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- binds K-turns in RNA switches as the occur in the L-box, the S-box and the T-box PubMed
- Protein family: ribosomal protein L7Ae family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: P46350
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Nathan J Baird, Jinwei Zhang, Tomoko Hamma, Adrian R Ferré-D'Amaré
YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops.
RNA: 2012, 18(4);759-70
[PubMed:22355167]
[WorldCat.org]
[DOI]
(I p)
Christine Eymann, Georg Homuth, Christian Scharf, Michael Hecker
Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.
J Bacteriol: 2002, 184(9);2500-20
[PubMed:11948165]
[WorldCat.org]
[DOI]
(P p)
