Difference between revisions of "YtrA"
| Line 82: | Line 82: | ||
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
| Line 100: | Line 100: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[ytrA]]-[[ytrB]]-[[ytrC]]-[[ytrD]]-[[ytrE]]-[[ytrF]]'' {{PubMed|10986249}} | + | * '''Operon:''' ''[[ytrG]]-[[ytrA]]-[[ytrB]]-[[ytrC]]-[[ytrD]]-[[ytrE]]-[[ytrF]]'' {{PubMed|10986249,21856850}} |
* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|10986249}} | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|10986249}} | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** induced by ramoplanin ([[YtrA]]) {{PubMed|21856850}} | ||
** expressed early in the stationary phase {{PubMed|10986249}} | ** expressed early in the stationary phase {{PubMed|10986249}} | ||
** induced by cold shock (5-fold) {{PubMed|12399512}} | ** induced by cold shock (5-fold) {{PubMed|12399512}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | ** [[YtrA]]: transcription repression {{PubMed|10986249}} | + | ** [[YtrA]]: transcription repression {{PubMed|10986249,21856850}} |
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 132: | Line 133: | ||
=References= | =References= | ||
| − | + | '''Additional publications:''' {{PubMed|21856850}} | |
<pubmed>10986249,12399512, </pubmed> | <pubmed>10986249,12399512, </pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:21, 24 August 2011
- Description: transcriptional repressor, GntR family, control of cell envelope stress responses in response to ramoplanin
| Gene name | ytrA |
| Synonyms | |
| Essential | no |
| Product | transcriptional repressor (GntR family) |
| Function | control of cell envelope stress responses |
| Metabolic function and regulation of this protein in SubtiPathways: Central C-metabolism | |
| MW, pI | 14 kDa, 8.094 |
| Gene length, protein length | 390 bp, 130 aa |
| Immediate neighbours | ytrB, ytzC |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
utilization of specific carbon sources, transcription factors and their control, cold stress proteins
This gene is a member of the following regulons
The YtrA regulon
The gene
Basic information
- Locus tag: BSU30460
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 3NEU (similar protein from Listeria innocua, 41% identity)
- UniProt: O34712
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Carsten L Beckering, Leif Steil, Michael H W Weber, Uwe Völker, Mohamed A Marahiel
Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis.
J Bacteriol: 2002, 184(22);6395-402
[PubMed:12399512]
[WorldCat.org]
[DOI]
(P p)
K I Yoshida, Y Fujita, S D Ehrlich
An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis.
J Bacteriol: 2000, 182(19);5454-61
[PubMed:10986249]
[WorldCat.org]
[DOI]
(P p)
