Difference between revisions of "SigV"
| Line 12: | Line 12: | ||
|style="background:#ABCDEF;" align="center"| '''Product''' || [[RNA polymerase]] ECF-type [[sigma factor]] SigV | |style="background:#ABCDEF;" align="center"| '''Product''' || [[RNA polymerase]] ECF-type [[sigma factor]] SigV | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || response to lysozyme |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SigV SigV] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SigV SigV] | ||
| Line 35: | Line 35: | ||
= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
{{SubtiWiki category|[[transcription]]}}, | {{SubtiWiki category|[[transcription]]}}, | ||
| − | {{SubtiWiki category|[[sigma factors and their control]]}} | + | {{SubtiWiki category|[[sigma factors and their control]]}}, |
| + | {{SubtiWiki category|[[cell envelope stress proteins (controlled by SigM, V, W, X, Y)]]}} | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| + | {{SubtiWiki regulon|[[SigV regulon]]}} | ||
| Line 81: | Line 83: | ||
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
** [[SigV]]-[[RsiV]] | ** [[SigV]]-[[RsiV]] | ||
** [[SigV]]-([[RpoB]]-[[RpoC]]) | ** [[SigV]]-([[RpoB]]-[[RpoC]]) | ||
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
| Line 101: | Line 103: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[sigV]]-[[rsiV]]'' {{PubMed| | + | * '''Operon:''' ''[[sigV]]-[[rsiV]]-[[oatA]]-[[yrhK]]'' {{PubMed|21856855}} |
| − | * '''[[Sigma factor]]:''' | + | * '''[[Sigma factor]]:''' [[SigV]] {{PubMed|21856855}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** induced by lysozyme ([[SigV]]) {{PubMed|21856855}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| Line 133: | Line 136: | ||
=References= | =References= | ||
'''Additional publications:''' {{PubMed|20817771}} | '''Additional publications:''' {{PubMed|20817771}} | ||
| − | <pubmed>14993308,16274938,17675383,19745567</pubmed> | + | <pubmed>14993308,16274938,17675383,19745567 21856855</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 16:32, 24 August 2011
- Description: RNA polymerase ECF-type sigma factor SigV
| Gene name | sigV |
| Synonyms | |
| Essential | no |
| Product | RNA polymerase ECF-type sigma factor SigV |
| Function | response to lysozyme |
| Interactions involving this protein in SubtInteract: SigV | |
| MW, pI | 19 kDa, 9.037 |
| Gene length, protein length | 498 bp, 166 aa |
| Immediate neighbours | yrhO, rsiV |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
transcription, sigma factors and their control, cell envelope stress proteins (controlled by SigM, V, W, X, Y)
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU27120
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ECF subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O05404
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Thomas Wiegert, University of Bayreuth, Germany Homepage
Your additional remarks
References
Additional publications: PubMed
