Difference between revisions of "SlrA"
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[biofilm formation]] | |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[biofilm formation]] | ||
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| + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SlrA SlrA] | ||
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm]''' | ||
Revision as of 08:08, 7 August 2011
- Description: anti-repressor, antagonist of SinR and SlrR, involved in control of flagellar genes and eps and tapA-sipW-tasA operons
| Gene name | slrA |
| Synonyms | |
| Essential | no |
| Product | antagonist of SinR and SlrR |
| Function | control of biofilm formation |
| Interactions involving this protein in SubtInteract: SlrA | |
| Regulation of this protein in SubtiPathways: Biofilm | |
| MW, pI | xx,x kDa, y.yy |
| Gene length, protein length | 156 bp, 52 aa |
| Immediate neighbours | ywcC, ywcB |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Contents
Categories containing this gene/protein
transcription factors and their control, transition state regulators, biofilm formation
This gene is a member of the following regulons
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry:
Additional information
This gene was only recently identified. PubMed
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: binding of SinR resulting in induction of SinR-repressed genes and operons PubMed
- Protein family:
- Paralogous protein(s): SinI
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Localization:
Database entries
- Structure:
- UniProt: P0C8M5
- KEGG entry: no entry
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Yunrong Chai, Roberto Kolter, Richard Losick
Paralogous antirepressors acting on the master regulator for biofilm formation in Bacillus subtilis.
Mol Microbiol: 2009, 74(4);876-87
[PubMed:19788541]
[WorldCat.org]
[DOI]
(I p)
Kazuo Kobayashi
SlrR/SlrA controls the initiation of biofilm formation in Bacillus subtilis.
Mol Microbiol: 2008, 69(6);1399-410
[PubMed:18647168]
[WorldCat.org]
[DOI]
(I p)
