Difference between revisions of "SmpB"
| Line 44: | Line 44: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| − | + | * impaired growth at high and low temperatures {{PubMed|15805528}} | |
=== Database entries === | === Database entries === | ||
| Line 52: | Line 52: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| − | |||
| Line 78: | Line 76: | ||
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''Interactions:''' [[SmpB]]-[[SsrA]] |
* '''Localization:''' cytoplasm (according to Swiss-Prot) | * '''Localization:''' cytoplasm (according to Swiss-Prot) | ||
| Line 97: | Line 95: | ||
* '''Operon:''' | * '''Operon:''' | ||
| + | ** ''[[secG]]-[[yvaK]]-[[rnr]]-[[smpB]]-[[ssrA]]'' {{PubMed|17369301}} | ||
| + | ** ''[[yvaK]]-[[rnr]]-[[smpB]]-[[ssrA]]'' {{PubMed|17369301}} | ||
| + | ** ''[[smpB]]-[[ssrA]]'' {{PubMed|17369301}} | ||
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** ''[[yvaK]]'': [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed] | ||
| − | * ''' | + | * '''Regulation:''' |
| + | ** ''[[yvaK]]'': induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed] | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 128: | Line 131: | ||
=References= | =References= | ||
| − | <pubmed>18977770,11395451,17369301,12730326,,10881189, </pubmed> | + | <pubmed>18977770,11395451,17369301,12730326,,10881189, 15805528 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 07:36, 3 February 2011
- Description: tmRNA-binding protein
| Gene name | smpB |
| Synonyms | yvaI |
| Essential | no |
| Product | tmRNA-binding protein |
| Function | trans-translation |
| MW, pI | 17 kDa, 10.421 |
| Gene length, protein length | 468 bp, 156 aa |
| Immediate neighbours | ssrA, rnr |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU33600
Phenotypes of a mutant
- impaired growth at high and low temperatures PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: smpB family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O32230
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
- Chet Price, Davis, USA homepage
Your additional remarks
References
