Difference between revisions of "YngJ"
(→Database entries) |
|||
| Line 80: | Line 80: | ||
=== Database entries === | === Database entries === | ||
| − | * '''Structure:''' | + | * '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?structureId=3OWA 3OWA] (from ''B. anthracis'', 37% identity, 54% similarity) |
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34421 O34421] | * '''UniProt:''' [http://www.uniprot.org/uniprot/O34421 O34421] | ||
Revision as of 18:03, 6 December 2010
- Description: 3-methylbutanoyl-CoA dehydrogenase
| Gene name | yngJ |
| Synonyms | |
| Essential | no |
| Product | 3-methylbutanoyl-CoA dehydrogenase |
| Function | mother cell metabolism, leucine utilization |
| MW, pI | 40 kDa, 5.794 |
| Gene length, protein length | 1140 bp, 380 aa |
| Immediate neighbours | yngI, ynzE |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU18260
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
Categories containing this gene/protein
utilization of amino acids, sporulation proteins
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: 3-methylbutanoyl-CoA --> 3-methylbut-2-enoyl-CoA PubMed
- Protein family:
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure: 3OWA (from B. anthracis, 37% identity, 54% similarity)
- UniProt: O34421
- KEGG entry: [3]
- E.C. number: 1.3.99.10
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Tzu-Lin Hsiao, Olga Revelles, Lifeng Chen, Uwe Sauer, Dennis Vitkup
Automatic policing of biochemical annotations using genomic correlations.
Nat Chem Biol: 2010, 6(1);34-40
[PubMed:19935659]
[WorldCat.org]
[DOI]
(I p)
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
Patrick Eichenberger, Shane T Jensen, Erin M Conlon, Christiaan van Ooij, Jessica Silvaggi, José Eduardo González-Pastor, Masaya Fujita, Sigal Ben-Yehuda, Patrick Stragier, Jun S Liu, Richard Losick
The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis.
J Mol Biol: 2003, 327(5);945-72
[PubMed:12662922]
[WorldCat.org]
[DOI]
(P p)
