Difference between revisions of "YvmC"
| Line 1: | Line 1: | ||
| − | * '''Description:''' | + | * '''Description:''' cyclodipeptide synthase<br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || cyclodipeptide synthase |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of the extracellular iron chelate pulcherrimin |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 6.612 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 6.612 | ||
| Line 53: | Line 53: | ||
* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| + | ** synthesis of the cyclic dipeptide cyclo-L-leucyl-L-leucyl with the corresponding charged tRNAs as substrates in an ATP-dependent manner {{PubMed|19430487}} | ||
* '''Protein family:''' | * '''Protein family:''' | ||
| Line 87: | Line 88: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | + | * '''Operon:''' ''[[yvmC]]-[[cypX]]'' [http://www.liebertonline.com/doi/pdf/10.1089/ind.2006.2.66 Reference] | |
| − | * '''Operon:''' | ||
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
| Line 117: | Line 117: | ||
=References= | =References= | ||
| − | + | <pubmed> 19430487 4204912 </pubmed> | |
| + | [http://www.liebertonline.com/doi/pdf/10.1089/ind.2006.2.66 additional paper] | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 12:22, 11 August 2010
- Description: cyclodipeptide synthase
| Gene name | yvmC |
| Synonyms | |
| Essential | no |
| Product | cyclodipeptide synthase |
| Function | biosynthesis of the extracellular iron chelate pulcherrimin |
| MW, pI | 28 kDa, 6.612 |
| Gene length, protein length | 744 bp, 248 aa |
| Immediate neighbours | cypX, yvmB |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU35070
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- synthesis of the cyclic dipeptide cyclo-L-leucyl-L-leucyl with the corresponding charged tRNAs as substrates in an ATP-dependent manner PubMed
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: O34351
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
