Difference between revisions of "YbdK"
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''ybdK'' [http://dbtbs.hgc.jp/COG/prom/ybdK.html DBTBS] |
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
| Line 94: | Line 94: | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| − | * '''Regulatory mechanism:''' | + | * '''Regulatory mechanism:''' [[ComK]]: positive regulation {{PubMed|11948146}} |
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 118: | Line 118: | ||
=References= | =References= | ||
| − | <pubmed>10094672,, </pubmed> | + | <pubmed>10094672,11948146 , </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 21:20, 26 July 2009
- Description: two-component sensor kinase (OmpR family)
| Gene name | ybdK |
| Synonyms | |
| Essential | no |
| Product | two-component sensor kinase (OmpR family) |
| Function | unknown |
| MW, pI | 37 kDa, 5.212 |
| Gene length, protein length | 960 bp, 320 aa |
| Immediate neighbours | ybdJ, ybdL |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU02010
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: ATP + protein L-histidine = ADP + protein N-phospho-L-histidine (according to Swiss-Prot)
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains: two transmembrane segments, C-terminal histidine phosphotransferase domain
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O31433
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: ybdK DBTBS
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Mitsuo Ogura, Hirotake Yamaguchi, Kazuo Kobayashi, Naotake Ogasawara, Yasutaro Fujita, Teruo Tanaka
Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK.
J Bacteriol: 2002, 184(9);2344-51
[PubMed:11948146]
[WorldCat.org]
[DOI]
(P p)
C Fabret, V A Feher, J A Hoch
Two-component signal transduction in Bacillus subtilis: how one organism sees its world.
J Bacteriol: 1999, 181(7);1975-83
[PubMed:10094672]
[WorldCat.org]
[DOI]
(P p)
