Difference between revisions of "YhfR"
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| − | * '''Description:''' involved in isopentenol (isoprenoid) biosynthesis <br/><br/> | + | * '''Description:''' phosphatase involved in isopentenol (isoprenoid) biosynthesis <br/><br/> |
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=== Basic information/ Evolution === | === Basic information/ Evolution === | ||
| − | * '''Catalyzed reaction/ biological activity:''' | + | * '''Catalyzed reaction/ biological activity:''' phosphatase involved in isopentenol (isoprenoid) biosynthesis |
* '''Protein family:''' GpmB subfamily (according to Swiss-Prot) similar to 2,3-diphosphoglycerate-dependent phosphoglycerate mutases [http://www.ncbi.nlm.nih.gov/sites/entrez/10869096 PubMed] | * '''Protein family:''' GpmB subfamily (according to Swiss-Prot) similar to 2,3-diphosphoglycerate-dependent phosphoglycerate mutases [http://www.ncbi.nlm.nih.gov/sites/entrez/10869096 PubMed] | ||
Revision as of 09:07, 13 July 2009
- Description: phosphatase involved in isopentenol (isoprenoid) biosynthesis
| Gene name | yhfR |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | isoprenoid biosynthesis |
| MW, pI | 21 kDa, 5.164 |
| Gene length, protein length | 579 bp, 193 aa |
| Immediate neighbours | yhfQ, yhfS |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU10340
Phenotypes of a mutant
no detectable phenotype PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: phosphatase involved in isopentenol (isoprenoid) biosynthesis
- Protein family: GpmB subfamily (according to Swiss-Prot) similar to 2,3-diphosphoglycerate-dependent phosphoglycerate mutases PubMed
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Swiss prot entry: O07617
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information: weakly expressed PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Sydnor T Withers, Shayin S Gottlieb, Bonny Lieu, Jack D Newman, Jay D Keasling
Identification of isopentenol biosynthetic genes from Bacillus subtilis by a screening method based on isoprenoid precursor toxicity.
Appl Environ Microbiol: 2007, 73(19);6277-83
[PubMed:17693564]
[WorldCat.org]
[DOI]
(P p)
Daniel J Rigden, Luciane V Mello, Peter Setlow, Mark J Jedrzejas
Structure and mechanism of action of a cofactor-dependent phosphoglycerate mutase homolog from Bacillus stearothermophilus with broad specificity phosphatase activity.
J Mol Biol: 2002, 315(5);1129-43
[PubMed:11827481]
[WorldCat.org]
[DOI]
(P p)
C L Pearson, C A Loshon, L B Pedersen, B Setlow, P Setlow
Analysis of the function of a putative 2,3-diphosphoglyceric acid-dependent phosphoglycerate mutase from Bacillus subtilis.
J Bacteriol: 2000, 182(14);4121-3
[PubMed:10869096]
[WorldCat.org]
[DOI]
(P p)
