Difference between revisions of "Talk:SubtiPathways"
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*(sugar between gluconate and xylose = '''beta'''-xylosides) | *(sugar between gluconate and xylose = '''beta'''-xylosides) | ||
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<br/> | <br/> | ||
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=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) === | === Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) === | ||
| − | write comments here | + | *write comments here |
=== Alanine, glycine, serine === | === Alanine, glycine, serine === | ||
| − | write comments here | + | *write comments here |
=== Aspartate, asparagine === | === Aspartate, asparagine === | ||
| − | write comments here | + | *write comments here |
=== Cysteine, methionine === | === Cysteine, methionine === | ||
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=== Isoleucine, valine, leucine === | === Isoleucine, valine, leucine === | ||
| − | beim Abbau Acyl-'''C'''oA nicht coA | + | |
| + | *beim Abbau Acyl-'''C'''oA nicht coA | ||
=== Lysine, threonine === | === Lysine, threonine === | ||
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=== Proline === | === Proline === | ||
| − | write comments here | + | *write comments here |
<br/> | <br/> | ||
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=== Nucleosides catabolism === | === Nucleosides catabolism === | ||
| − | write comments here | + | *write comments here |
=== Purine metabolism === | === Purine metabolism === | ||
| − | write comments here | + | *write comments here |
| − | === | + | === Purine catabolism === |
| − | write comments here | + | *write comments here |
| − | === | + | === Purine salvage pathways === |
*(RelA muss groß geschrieben werden) | *(RelA muss groß geschrieben werden) | ||
* GucA nicht in SubtiWiki | * GucA nicht in SubtiWiki | ||
| − | === | + | === Pyrimidine metabolism === |
| + | |||
| + | *write comments here | ||
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<br/> | <br/> | ||
| − | == Stress response == | + | == Metabolism of cofactors == |
| + | |||
| + | === CoA synthesis === | ||
| + | |||
| + | *write comments here | ||
| + | |||
| + | === Folate biosynthesis === | ||
| + | |||
| + | *write comments here | ||
| + | |||
| + | === Menaquinone === | ||
| + | |||
| + | *write comments here | ||
| + | |||
| + | <br/> | ||
| + | == Other pathways == | ||
| + | |||
| + | === Cellwall === | ||
| + | |||
| + | *write comments here | ||
| + | |||
| + | === Stress response === | ||
* (PurP muss PurS sein) | * (PurP muss PurS sein) | ||
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* sigF groß | * sigF groß | ||
* glutamate (bei Prolinsynthese) lila | * glutamate (bei Prolinsynthese) lila | ||
| − | |||
| − | == Sulfate assimilation == | + | === Sulfate assimilation === |
| − | write comments here | + | *write comments here |
| − | + | === tRNA charging === | |
| − | == tRNA charging == | ||
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg | *Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg | ||
Revision as of 13:08, 1 July 2009
Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!
Contents
General comments about all diagrams
- There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.
- Comments in brackets have been changed in the original files, but have not been uploaded yet.
Carbon metabolism
Central carbon metabolism
- Please check whether the "y" genes in the diagrams have already new names. For example, yqjH is polY1. If you are on the PolY1 page in subtiwiki and you get the link to the pathway it is not obvious whtat to look for (PolY1) is not in the list. Jörg
Utilization of different carbon sources
- (sugar between gluconate and xylose = beta-xylosides)
Nitrogen and amino acid metabolism
Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)
- write comments here
Alanine, glycine, serine
- write comments here
Aspartate, asparagine
- write comments here
Cysteine, methionine
- Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki.
Histidine
- Description for HutU
Isoleucine, valine, leucine
- beim Abbau Acyl-CoA nicht coA
Lysine, threonine
- SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.
Phenylalanine, tyrosine, tryptophan
- pyr rot (sorry Repel :))
Proline
- write comments here
Nucleotides
Gene regulation of nucleotides
- dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?
- RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!
Nucleosides catabolism
- write comments here
Purine metabolism
- write comments here
Purine catabolism
- write comments here
Purine salvage pathways
- (RelA muss groß geschrieben werden)
- GucA nicht in SubtiWiki
Pyrimidine metabolism
- write comments here
Metabolism of cofactors
CoA synthesis
- write comments here
Folate biosynthesis
- write comments here
Menaquinone
- write comments here
Other pathways
Cellwall
- write comments here
Stress response
- (PurP muss PurS sein)
- (SpoVt muss SpoVT sein)
- (sigB groß)
- sigF groß
- glutamate (bei Prolinsynthese) lila
Sulfate assimilation
- write comments here
tRNA charging
- Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg
