Difference between revisions of "SigW regulon"
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* The [[SigW]] regulon is induced by alkaline shock and by polymyxin B, vancomycin, cephalosporin C, D-cycloserine, and triton X-100. | * The [[SigW]] regulon is induced by alkaline shock and by polymyxin B, vancomycin, cephalosporin C, D-cycloserine, and triton X-100. | ||
| + | * The [[SigW]] regulon is downregulated in a ''[[rocG]] [[gudB]]'' mutant {{PubMed|22178969}} | ||
| + | * The [[SigW]] regulon mediates resistance to cell wall antibiotics | ||
| + | |||
| + | ==Related ''Subti''Wiki pages== | ||
| + | * [[Resistance against toxins/ antibiotics]] | ||
= Genes in this [[regulon]] = | = Genes in this [[regulon]] = | ||
| − | |||
* ''[[bcrC]]'' | * ''[[bcrC]]'' | ||
* ''[[divIC]]'' | * ''[[divIC]]'' | ||
* ''[[fabF]]'' | * ''[[fabF]]'' | ||
| − | * ''[[ | + | * ''[[fatR]]'' |
* ''[[fosB]]'' | * ''[[fosB]]'' | ||
| − | * ''[[pbpE]] | + | * ''[[pbpE]]-[[racX]]'' |
| − | |||
* ''[[pspA]]'' | * ''[[pspA]]'' | ||
| − | * ''[[ | + | * ''[[sasA]]'' |
| − | * ''[[rsiW]]'' | + | * ''[[sigW]]-[[rsiW]]'' |
| − | * ''[[ | + | * ''[[spo0M]]'' |
* ''[[sppA]]'' | * ''[[sppA]]'' | ||
* ''[[spx]]'' | * ''[[spx]]'' | ||
| − | * ''[[xpaC]] | + | * ''[[xpaC]]-[[yaaN]]-[[yaaO]]'' |
| − | |||
| − | |||
* ''[[ybfO]]'' | * ''[[ybfO]]'' | ||
| − | * ''[[ | + | * ''[[ybfP]]'' |
| − | * ''[[ | + | * ''[[ybfQ]]'' |
| − | * ''[[ | + | * ''[[yceC]]-[[yceD]]-[[yceE]]-[[yceF]]-[[yceG]]-[[yceH]]'' |
| − | + | * ''[[ydbS]]-[[ydbT]]'' | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | * ''[[ | ||
| − | |||
* ''[[ydjO]]'' | * ''[[ydjO]]'' | ||
* ''[[ydjP]]'' | * ''[[ydjP]]'' | ||
* ''[[yeaA]]'' | * ''[[yeaA]]'' | ||
| − | + | * ''[[yfhL]]-[[yfhM]]'' | |
| − | * ''[[yfhL]] | ||
| − | |||
* ''[[yjbC]]'' | * ''[[yjbC]]'' | ||
* ''[[yjoB]]'' | * ''[[yjoB]]'' | ||
| − | * ''[[yknW]] | + | * ''[[yknW]]-[[yknX]]-[[yknY]]-[[yknZ]]'' |
| − | |||
| − | |||
| − | |||
* ''[[yoaF]]'' | * ''[[yoaF]]'' | ||
* ''[[yoaG]]'' | * ''[[yoaG]]'' | ||
* ''[[yobJ]]'' | * ''[[yobJ]]'' | ||
* ''[[yozO]]'' | * ''[[yozO]]'' | ||
| − | * ''[[yqeZ]] | + | * ''[[yqeZ]]-[[floA]]-[[yqfB]]'' |
| − | |||
| − | |||
* ''[[yqjL]]'' | * ''[[yqjL]]'' | ||
* ''[[yrhH]]'' | * ''[[yrhH]]'' | ||
| + | * ''[[yrhJ]]'' | ||
* ''[[ysdB]]'' | * ''[[ysdB]]'' | ||
* ''[[yteJ]]'' | * ''[[yteJ]]'' | ||
* ''[[ythP]]'' | * ''[[ythP]]'' | ||
* ''[[ythQ]]'' | * ''[[ythQ]]'' | ||
| − | * ''[[yuaF]] | + | * ''[[yuaF]]-[[floT]]-[[yuaI]]'' |
| − | + | * ''[[yvlA]]-[[yvlB]]-[[yvlC]]-[[yvlD]]'' | |
| − | * ''[[yvlA]] | ||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[ywbN]]'' | * ''[[ywbN]]'' | ||
| + | * ''[[ywbO]]'' | ||
* ''[[ywnJ]]'' | * ''[[ywnJ]]'' | ||
* ''[[ywrE]]'' | * ''[[ywrE]]'' | ||
* ''[[yxjI]]'' | * ''[[yxjI]]'' | ||
* ''[[yxzE]]'' | * ''[[yxzE]]'' | ||
| + | |||
= Important publications on the [[SigW]] [[regulon]] = | = Important publications on the [[SigW]] [[regulon]] = | ||
| − | <pubmed>9683469,16629676,17675383,11866510,9987136,10960106, </pubmed> | + | <pubmed>23155385,22178969 9683469,16629676,17675383,11866510,9987136,10960106, 23934352,26901131 </pubmed> |
=Back to [[regulons]]= | =Back to [[regulons]]= | ||
Latest revision as of 13:25, 24 February 2016
| Regulator | |
- The SigW regulon is induced by alkaline shock and by polymyxin B, vancomycin, cephalosporin C, D-cycloserine, and triton X-100.
- The SigW regulon is downregulated in a rocG gudB mutant PubMed
- The SigW regulon mediates resistance to cell wall antibiotics
Contents
Related SubtiWiki pages
Genes in this regulon
- bcrC
- divIC
- fabF
- fatR
- fosB
- pbpE-racX
- pspA
- sasA
- sigW-rsiW
- spo0M
- sppA
- spx
- xpaC-yaaN-yaaO
- ybfO
- ybfP
- ybfQ
- yceC-yceD-yceE-yceF-yceG-yceH
- ydbS-ydbT
- ydjO
- ydjP
- yeaA
- yfhL-yfhM
- yjbC
- yjoB
- yknW-yknX-yknY-yknZ
- yoaF
- yoaG
- yobJ
- yozO
- yqeZ-floA-yqfB
- yqjL
- yrhH
- yrhJ
- ysdB
- yteJ
- ythP
- ythQ
- yuaF-floT-yuaI
- yvlA-yvlB-yvlC-yvlD
- ywbN
- ywbO
- ywnJ
- ywrE
- yxjI
- yxzE
Important publications on the SigW regulon
John D Helmann
Bacillus subtilis extracytoplasmic function (ECF) sigma factors and defense of the cell envelope.
Curr Opin Microbiol: 2016, 30;122-132
[PubMed:26901131]
[WorldCat.org]
[DOI]
(I p)
Chun-Kai Yang, Phang C Tai, Chung-Dar Lu
Time-related transcriptome analysis of B. subtilis 168 during growth with glucose.
Curr Microbiol: 2014, 68(1);12-20
[PubMed:23934352]
[WorldCat.org]
[DOI]
(I p)
Jessica C Zweers, Pierre Nicolas, Thomas Wiegert, Jan Maarten van Dijl, Emma L Denham
Definition of the σ(W) regulon of Bacillus subtilis in the absence of stress.
PLoS One: 2012, 7(11);e48471
[PubMed:23155385]
[WorldCat.org]
[DOI]
(I p)
Yong Heon Lee, Anthony W Kingston, John D Helmann
Glutamate dehydrogenase affects resistance to cell wall antibiotics in Bacillus subtilis.
J Bacteriol: 2012, 194(5);993-1001
[PubMed:22178969]
[WorldCat.org]
[DOI]
(I p)
Thorsten Mascher, Anna-Barbara Hachmann, John D Helmann
Regulatory overlap and functional redundancy among Bacillus subtilis extracytoplasmic function sigma factors.
J Bacteriol: 2007, 189(19);6919-27
[PubMed:17675383]
[WorldCat.org]
[DOI]
(P p)
Bronwyn G Butcher, John D Helmann
Identification of Bacillus subtilis sigma-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli.
Mol Microbiol: 2006, 60(3);765-82
[PubMed:16629676]
[WorldCat.org]
[DOI]
(P p)
Min Cao, Phil A Kobel, Maud M Morshedi, Ming Fang Winston Wu, Chris Paddon, John D Helmann
Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches.
J Mol Biol: 2002, 316(3);443-57
[PubMed:11866510]
[WorldCat.org]
[DOI]
(P p)
M S Turner, J D Helmann
Mutations in multidrug efflux homologs, sugar isomerases, and antimicrobial biosynthesis genes differentially elevate activity of the sigma(X) and sigma(W) factors in Bacillus subtilis.
J Bacteriol: 2000, 182(18);5202-10
[PubMed:10960106]
[WorldCat.org]
[DOI]
(P p)
X Huang, A Gaballa, M Cao, J D Helmann
Identification of target promoters for the Bacillus subtilis extracytoplasmic function sigma factor, sigma W.
Mol Microbiol: 1999, 31(1);361-71
[PubMed:9987136]
[WorldCat.org]
[DOI]
(P p)
X Huang, K L Fredrick, J D Helmann
Promoter recognition by Bacillus subtilis sigmaW: autoregulation and partial overlap with the sigmaX regulon.
J Bacteriol: 1998, 180(15);3765-70
[PubMed:9683469]
[WorldCat.org]
[DOI]
(P p)
