Difference between revisions of "Stringent response"
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{{RegulonTable| | {{RegulonTable| | ||
Regulator=[[stringent response]] | Regulator=[[stringent response]] | ||
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=== Negative regulation === | === Negative regulation === | ||
* ''[[adk]]'' | * ''[[adk]]'' | ||
| − | * ''[[ | + | * ''[[atpI]]-[[atpB]]-[[atpE]]-[[atpF]]-[[atpH]]-[[atpA]]-[[atpG]]-[[atpD]]-[[atpC]]'' |
| − | + | * ''[[cymR]]-[[yrvO]]-[[trmU]]'' | |
| − | + | * ''[[dltA]]-[[dltB]]-[[dltC]]-[[dltD]]-[[dltE]]'' | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | * ''[[cymR]]'' | ||
| − | * ''[[dltA]] | ||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[dxs]]'' | * ''[[dxs]]'' | ||
* ''[[frr]]'' | * ''[[frr]]'' | ||
* ''[[fusA]]'' | * ''[[fusA]]'' | ||
| − | * ''[[gcaD]]'' | + | * ''[[gcaD]]-[[prs]]'' |
* ''[[infA]]'' | * ''[[infA]]'' | ||
| − | * ''[[ | + | * ''[[infC]]-[[rpmI]]-[[rplT]]'' |
| − | |||
* ''[[map]]'' | * ''[[map]]'' | ||
* ''[[mbl]]'' | * ''[[mbl]]'' | ||
* ''[[murE]]'' | * ''[[murE]]'' | ||
| − | |||
| − | |||
* ''[[nusB]]'' | * ''[[nusB]]'' | ||
| − | * ''[[pdhA]] | + | * ''[[pdhA]]-[[pdhB]]-[[pdhC]]-[[pdhD]]'' |
| − | |||
| − | |||
| − | |||
* ''[[pnpA]]'' | * ''[[pnpA]]'' | ||
| − | + | * ''[[ptsG]]-[[ptsH]]-[[ptsI]]'' | |
| − | * ''[[ptsG]] | ||
| − | |||
| − | |||
* ''[[pyrH]]'' | * ''[[pyrH]]'' | ||
| − | * ''[[qoxA]] | + | * ''[[qoxA]]-[[qoxB]]-[[qoxC]]-[[qoxD]]'' |
| − | + | * ''[[recJ]]'' | |
| − | |||
| − | |||
| − | * ''[[ | ||
* ''[[rnc]]'' | * ''[[rnc]]'' | ||
* ''[[rplA]]'' | * ''[[rplA]]'' | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[rplJ]]'' | * ''[[rplJ]]'' | ||
* ''[[rplK]]'' | * ''[[rplK]]'' | ||
* ''[[rplL]]'' | * ''[[rplL]]'' | ||
* ''[[rplM]]'' | * ''[[rplM]]'' | ||
| − | |||
| − | |||
| − | |||
* ''[[rplQ]]'' | * ''[[rplQ]]'' | ||
| − | |||
* ''[[rplS]]'' | * ''[[rplS]]'' | ||
| − | |||
* ''[[rplU]]'' | * ''[[rplU]]'' | ||
| − | |||
| − | |||
| − | |||
* ''[[rpmB]]'' | * ''[[rpmB]]'' | ||
| − | |||
| − | |||
* ''[[rpmE]]'' | * ''[[rpmE]]'' | ||
* ''[[rpmF]]'' | * ''[[rpmF]]'' | ||
| − | |||
* ''[[rpmJ]]'' | * ''[[rpmJ]]'' | ||
* ''[[rpoA]]'' | * ''[[rpoA]]'' | ||
| Line 84: | Line 43: | ||
* ''[[rpoC]]'' | * ''[[rpoC]]'' | ||
* ''[[rpsB]]'' | * ''[[rpsB]]'' | ||
| − | |||
* ''[[rpsD]]'' | * ''[[rpsD]]'' | ||
| − | * ''[[ | + | * ''[[rpsF]]-[[ssbA]]-[[rpsR]]'' |
| − | |||
* ''[[rpsG]]'' | * ''[[rpsG]]'' | ||
| − | |||
* ''[[rpsI]]'' | * ''[[rpsI]]'' | ||
| − | * ''[[rpsJ]]'' | + | * ''[[rpsJ]]-[[rplC]]-[[rplD]]-[[rplW]]-[[rplB]]-[[rpsS]]-[[rplV]]-[[rpsC]]-[[rplP]]-[[rpmC]]-[[rpsQ]]-[[rplN]]-[[rplX]]-[[rplE]]-[[rpsN]]-[[rpsH]]-[[rplF]]-[[rplR]]-[[rpsE]]-[[rpmD]]-[[rplO]]'' |
* ''[[rpsK]]'' | * ''[[rpsK]]'' | ||
* ''[[rpsL]]'' | * ''[[rpsL]]'' | ||
* ''[[rpsM]]'' | * ''[[rpsM]]'' | ||
| − | |||
* ''[[rpsO]]'' | * ''[[rpsO]]'' | ||
* ''[[rpsP]]'' | * ''[[rpsP]]'' | ||
| − | + | * ''[[scpA]]-[[scpB]]'' | |
| − | |||
| − | |||
| − | * ''[[scpA]] | ||
| − | |||
* ''[[secY]]'' | * ''[[secY]]'' | ||
| − | |||
* ''[[tig]]'' | * ''[[tig]]'' | ||
| − | |||
* ''[[truA]]'' | * ''[[truA]]'' | ||
* ''[[tsf]]'' | * ''[[tsf]]'' | ||
| Line 112: | Line 61: | ||
* ''[[ybxB]]'' | * ''[[ybxB]]'' | ||
* ''[[ybxF]]'' | * ''[[ybxF]]'' | ||
| − | * ''[[yjlC]]'' | + | * ''[[yjlC]]-[[ndh]]'' |
* ''[[ylaG]]'' | * ''[[ylaG]]'' | ||
* ''[[ylbN]]'' | * ''[[ylbN]]'' | ||
| − | * ''[[ | + | * ''[[ylxS]]-[[nusA]]-[[ylxR]]-[[ylxQ]]-[[infB]]-[[ylxP]]-[[rbfA]]'' |
| − | + | ||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[ysxB]]'' | * ''[[ysxB]]'' | ||
* ''[[yugI]]'' | * ''[[yugI]]'' | ||
| Line 127: | Line 72: | ||
* ''[[alsS]]-[[alsD]]'' | * ''[[alsS]]-[[alsD]]'' | ||
* ''[[pycA]]'' | * ''[[pycA]]'' | ||
| + | |||
| + | =Key original publications= | ||
| + | <pubmed>20081037 18433449 11948165 9383190 </pubmed> | ||
| + | |||
| + | =Important reviews= | ||
| + | <pubmed>18452582 17982469 24462007 </pubmed> | ||
| + | |||
| + | =Back to [[regulons]]= | ||
Latest revision as of 08:52, 7 July 2015
| Regulator | |
Contents
Genes in this regulon
Negative regulation
- adk
- atpI-atpB-atpE-atpF-atpH-atpA-atpG-atpD-atpC
- cymR-yrvO-trmU
- dltA-dltB-dltC-dltD-dltE
- dxs
- frr
- fusA
- gcaD-prs
- infA
- infC-rpmI-rplT
- map
- mbl
- murE
- nusB
- pdhA-pdhB-pdhC-pdhD
- pnpA
- ptsG-ptsH-ptsI
- pyrH
- qoxA-qoxB-qoxC-qoxD
- recJ
- rnc
- rplA
- rplJ
- rplK
- rplL
- rplM
- rplQ
- rplS
- rplU
- rpmB
- rpmE
- rpmF
- rpmJ
- rpoA
- rpoB
- rpoC
- rpsB
- rpsD
- rpsF-ssbA-rpsR
- rpsG
- rpsI
- rpsJ-rplC-rplD-rplW-rplB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ-rplN-rplX-rplE-rpsN-rpsH-rplF-rplR-rpsE-rpmD-rplO
- rpsK
- rpsL
- rpsM
- rpsO
- rpsP
- scpA-scpB
- secY
- tig
- truA
- tsf
- tufA
- ybxB
- ybxF
- yjlC-ndh
- ylaG
- ylbN
- ylxS-nusA-ylxR-ylxQ-infB-ylxP-rbfA
Positive regulation
Key original publications
Important reviews
Tobias Geiger, Christiane Wolz
Intersection of the stringent response and the CodY regulon in low GC Gram-positive bacteria.
Int J Med Microbiol: 2014, 304(2);150-5
[PubMed:24462007]
[WorldCat.org]
[DOI]
(I p)
Charles L Turnbough
Regulation of bacterial gene expression by the NTP substrates of transcription initiation.
Mol Microbiol: 2008, 69(1);10-4
[PubMed:18452582]
[WorldCat.org]
[DOI]
(I p)
Abraham L Sonenshein
Control of key metabolic intersections in Bacillus subtilis.
Nat Rev Microbiol: 2007, 5(12);917-27
[PubMed:17982469]
[WorldCat.org]
[DOI]
(I p)
