Difference between revisions of "Stusti 2018"
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= Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas = | = Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas = | ||
| − | == | + | == What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl == |
| − | <pubmed> | + | <pubmed> 21930584</pubmed> |
| − | + | == RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner == | |
| − | + | <pubmed> 24219496 8156586 28979293 26109351</pubmed> | |
| + | == Ribozymes (catalytically active RNAs: Christian Thielscher) == | ||
| + | <pubmed> 21930582 22454536 14730013 10554775 21930585 6297745</pubmed> | ||
| + | == The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz == | ||
| + | <pubmed> 18292779 21930591 25500179</pubmed> | ||
| − | + | == The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider == | |
| − | + | <pubmed> 24452469,26682498 25798239 </pubmed> | |
| − | |||
| − | + | == Riboregulation and virulence, targeting by antibiotics: Theresia Eisele == | |
| − | |||
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| − | |||
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| − | == Riboregulation and virulence, targeting by antibiotics == | ||
<pubmed>27651123 26416753 | <pubmed>27651123 26416753 | ||
| − | 27120414 | + | 27120414 27672192 28434876 28529506 28886688</pubmed> |
| − | + | == Riboswitch modeling: Mark Sinzger == | |
| + | <pubmed>19381267 28591515 27378291</pubmed> | ||
| − | == RNA | + | |
| − | <pubmed> | + | == The RNA world and evolution: Roman Doll == |
| + | <pubmed> 25109990 25385129 25734234 25739364 26439358 17540026 29031737 28657884 19117371</pubmed> | ||
| − | + | == RNA modification: Jan Michel Göring == | |
| − | + | <pubmed> 26189113 26832457 27375676 | |
| − | + | 28264529 28624569</pubmed> | |
| − | |||
| − | |||
| − | |||
| − | == | ||
| − | <pubmed> | ||
| − | |||
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| − | + | == RNA degradation/processing: Lena Kricsfalussy-Hrabar == | |
| + | <pubmed> 26096689 28202538 19239894 </pubmed> | ||
| − | == | + | == Regulation by non-coding RNA: Maxin Drömer == |
| − | <pubmed> | + | <pubmed> 18981470 24667238 </pubmed> |
| − | + | == RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel== | |
| − | + | <pubmed> 18972389 26830230 28141967 </pubmed> | |
| − | == RNA | ||
| − | <pubmed> | ||
| − | |||
| − | == | + | == CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier == |
| − | <pubmed> | + | <pubmed> 29358495 29169146 28375731</pubmed> |
| − | + | == CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton == | |
| − | + | <pubmed> 26771484 </pubmed> | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | == | ||
| − | <pubmed> | ||
| − | + | == Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol == | |
| + | <pubmed> 22016848 26186290 21957054 23166520 21930591</pubmed> | ||
| − | + | == Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA) == | |
| + | <pubmed> 28533025 25561718 26883671 28485684 29182528 21925379</pubmed> | ||
| − | == RNA | + | == Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways == |
| − | <pubmed> | + | <pubmed> 17627883 19943183 </pubmed> |
| − | == | + | == RNA-based second messengers: Jörg Stülke == |
| − | <pubmed> | + | <pubmed> 28420751 25616065 25682701 25869574 26280533</pubmed> |
| − | + | == Riboswitches: Jörg Stülke == | |
| + | <pubmed> 27607554 26655897 28121427 29618088 25794618 25794617 25848023 24769284 25571850 25964329 25959893 24816551 25583497 26118534 26494285 28206750 28375729 28396576 28541183 28455443 29537923 27798597 29135333 29420816 28611182</pubmed> | ||
| − | </pubmed> | + | == RNA dependent RNA Polymerases – the RNA replicase == |
| + | <pubmed> 29439438 18268843 9878607 </pubmed> | ||
| − | == | + | == The mysterious function and role of 6S-RNA and pRNA in bacteria == |
| − | <pubmed> | + | <pubmed> 24786589 17383220 24742053 23457253</pubmed> |
| − | |||
| − | == | + | == RNA thermometers== |
| − | <pubmed> | + | <pubmed>25477380 27060146 </pubmed> |
Latest revision as of 13:42, 27 July 2018
Contents
- 1 Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas
- 1.1 What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl
- 1.2 RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner
- 1.3 Ribozymes (catalytically active RNAs: Christian Thielscher)
- 1.4 The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz
- 1.5 The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider
- 1.6 Riboregulation and virulence, targeting by antibiotics: Theresia Eisele
- 1.7 Riboswitch modeling: Mark Sinzger
- 1.8 The RNA world and evolution: Roman Doll
- 1.9 RNA modification: Jan Michel Göring
- 1.10 RNA degradation/processing: Lena Kricsfalussy-Hrabar
- 1.11 Regulation by non-coding RNA: Maxin Drömer
- 1.12 RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel
- 1.13 CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier
- 1.14 CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton
- 1.15 Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol
- 1.16 Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA)
- 1.17 Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways
- 1.18 RNA-based second messengers: Jörg Stülke
- 1.19 Riboswitches: Jörg Stülke
- 1.20 RNA dependent RNA Polymerases – the RNA replicase
- 1.21 The mysterious function and role of 6S-RNA and pRNA in bacteria
- 1.22 RNA thermometers
Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas
What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl
RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner
Ribozymes (catalytically active RNAs: Christian Thielscher)
Christian Hammann, Andrej Luptak, Jonathan Perreault, Marcos de la Peña
The ubiquitous hammerhead ribozyme.
RNA: 2012, 18(5);871-85
[PubMed:22454536]
[WorldCat.org]
[DOI]
(I p)
Sidney Altman
Ribonuclease P.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2936-41
[PubMed:21930585]
[WorldCat.org]
[DOI]
(I p)
David M J Lilley
Mechanisms of RNA catalysis.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2910-7
[PubMed:21930582]
[WorldCat.org]
[DOI]
(I p)
David M J Lilley
The Varkud satellite ribozyme.
RNA: 2004, 10(2);151-8
[PubMed:14730013]
[WorldCat.org]
[DOI]
(P p)
R Shippy, R Lockner, M Farnsworth, A Hampel
The hairpin ribozyme. Discovery, mechanism, and development for gene therapy.
Mol Biotechnol: 1999, 12(1);117-29
[PubMed:10554775]
[WorldCat.org]
[DOI]
(P p)
K Kruger, P J Grabowski, A J Zaug, J Sands, D E Gottschling, T R Cech
Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena.
Cell: 1982, 31(1);147-57
[PubMed:6297745]
[WorldCat.org]
[DOI]
(P p)
The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz
Meredith Root-Bernstein, Robert Root-Bernstein
The ribosome as a missing link in the evolution of life.
J Theor Biol: 2015, 367;130-158
[PubMed:25500179]
[WorldCat.org]
[DOI]
(I p)
Ingo Wohlgemuth, Corinna Pohl, Joerg Mittelstaet, Andrey L Konevega, Marina V Rodnina
Evolutionary optimization of speed and accuracy of decoding on the ribosome.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2979-86
[PubMed:21930591]
[WorldCat.org]
[DOI]
(I p)
Thomas A Steitz
A structural understanding of the dynamic ribosome machine.
Nat Rev Mol Cell Biol: 2008, 9(3);242-53
[PubMed:18292779]
[WorldCat.org]
[DOI]
(I p)
The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider
Riboregulation and virulence, targeting by antibiotics: Theresia Eisele
Riboswitch modeling: Mark Sinzger
Christopher Schneider, Leo Bronstein, Jascha Diemer, Heinz Koeppl, Beatrix Suess
ROC'n'Ribo: Characterizing a Riboswitching Expression System by Modeling Single-Cell Data.
ACS Synth Biol: 2017, 6(7);1211-1224
[PubMed:28591515]
[WorldCat.org]
[DOI]
(I p)
Marco Barsacchi, Eva Maria Novoa, Manolis Kellis, Alessio Bechini
SwiSpot: modeling riboswitches by spotting out switching sequences.
Bioinformatics: 2016, 32(21);3252-3259
[PubMed:27378291]
[WorldCat.org]
[DOI]
(I p)
Chase L Beisel, Christina D Smolke
Design principles for riboswitch function.
PLoS Comput Biol: 2009, 5(4);e1000363
[PubMed:19381267]
[WorldCat.org]
[DOI]
(I p)
The RNA world and evolution: Roman Doll
RNA modification: Jan Michel Göring
RNA degradation/processing: Lena Kricsfalussy-Hrabar
John C Zinder, Christopher D Lima
Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors.
Genes Dev: 2017, 31(2);88-100
[PubMed:28202538]
[WorldCat.org]
[DOI]
(I p)
Soraya Aït-Bara, Agamemnon J Carpousis
RNA degradosomes in bacteria and chloroplasts: classification, distribution and evolution of RNase E homologs.
Mol Microbiol: 2015, 97(6);1021-135
[PubMed:26096689]
[WorldCat.org]
[DOI]
(I p)
Jonathan Houseley, David Tollervey
The many pathways of RNA degradation.
Cell: 2009, 136(4);763-76
[PubMed:19239894]
[WorldCat.org]
[DOI]
(I p)
Regulation by non-coding RNA: Maxin Drömer
RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel
R Alex Wu, Heather E Upton, Jacob M Vogan, Kathleen Collins
Telomerase Mechanism of Telomere Synthesis.
Annu Rev Biochem: 2017, 86;439-460
[PubMed:28141967]
[WorldCat.org]
[DOI]
(I p)
Yoshiko Maida, Mami Yasukawa, Kenkichi Masutomi
De Novo RNA Synthesis by RNA-Dependent RNA Polymerase Activity of Telomerase Reverse Transcriptase.
Mol Cell Biol: 2016, 36(8);1248-59
[PubMed:26830230]
[WorldCat.org]
[DOI]
(I e)
George Tzertzinis, Stanley Tabor, Nicole M Nichols
RNA-dependent DNA polymerases.
Curr Protoc Mol Biol: 2008, Chapter 3;Unit3.7
[PubMed:18972389]
[WorldCat.org]
[DOI]
(I p)
CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier
CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton
Addison V Wright, James K Nuñez, Jennifer A Doudna
Biology and Applications of CRISPR Systems: Harnessing Nature's Toolbox for Genome Engineering.
Cell: 2016, 164(1-2);29-44
[PubMed:26771484]
[WorldCat.org]
[DOI]
(I p)
Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol
Tessa E F Quax, Nico J Claassens, Dieter Söll, John van der Oost
Codon Bias as a Means to Fine-Tune Gene Expression.
Mol Cell: 2015, 59(2);149-61
[PubMed:26186290]
[WorldCat.org]
[DOI]
(I p)
Sibah Alkatib, Lars B Scharff, Marcelo Rogalski, Tobias T Fleischmann, Annemarie Matthes, Stefanie Seeger, Mark A Schöttler, Stephanie Ruf, Ralph Bock
The contributions of wobbling and superwobbling to the reading of the genetic code.
PLoS Genet: 2012, 8(11);e1003076
[PubMed:23166520]
[WorldCat.org]
[DOI]
(I p)
Tamir Tuller
Codon bias, tRNA pools and horizontal gene transfer.
Mob Genet Elements: 2011, 1(1);75-77
[PubMed:22016848]
[WorldCat.org]
[DOI]
(P p)
Richard Giegé, Frank Jühling, Joern Pütz, Peter Stadler, Claude Sauter, Catherine Florentz
Structure of transfer RNAs: similarity and variability.
Wiley Interdiscip Rev RNA: 2012, 3(1);37-61
[PubMed:21957054]
[WorldCat.org]
[DOI]
(I p)
Ingo Wohlgemuth, Corinna Pohl, Joerg Mittelstaet, Andrey L Konevega, Marina V Rodnina
Evolutionary optimization of speed and accuracy of decoding on the ribosome.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2979-86
[PubMed:21930591]
[WorldCat.org]
[DOI]
(I p)
Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA)
Shahnaz Haque, Lorna W Harries
Circular RNAs (circRNAs) in Health and Disease.
Genes (Basel): 2017, 8(12);
[PubMed:29182528]
[WorldCat.org]
[DOI]
(P e)
Feng Liu
Enhancer-derived RNA: A Primer.
Genomics Proteomics Bioinformatics: 2017, 15(3);196-200
[PubMed:28533025]
[WorldCat.org]
[DOI]
(I p)
Kuei-Yang Hsiao, H Sunny Sun, Shaw-Jenq Tsai
Circular RNA - New member of noncoding RNA with novel functions.
Exp Biol Med (Maywood): 2017, 242(11);1136-1141
[PubMed:28485684]
[WorldCat.org]
[DOI]
(I p)
Yiwen Fang, Melissa J Fullwood
Roles, Functions, and Mechanisms of Long Non-coding RNAs in Cancer.
Genomics Proteomics Bioinformatics: 2016, 14(1);42-54
[PubMed:26883671]
[WorldCat.org]
[DOI]
(I p)
Tae-Kyung Kim, Martin Hemberg, Jesse M Gray
Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers.
Cold Spring Harb Perspect Biol: 2015, 7(1);a018622
[PubMed:25561718]
[WorldCat.org]
[DOI]
(I e)
Kevin C Wang, Howard Y Chang
Molecular mechanisms of long noncoding RNAs.
Mol Cell: 2011, 43(6);904-14
[PubMed:21925379]
[WorldCat.org]
[DOI]
(I p)
Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways
RNA-based second messengers: Jörg Stülke
Riboswitches: Jörg Stülke
RNA dependent RNA Polymerases – the RNA replicase
The mysterious function and role of 6S-RNA and pRNA in bacteria
Benedikt Steuten, Philipp G Hoch, Katrin Damm, Sabine Schneider, Karen Köhler, Rolf Wagner, Roland K Hartmann
Regulation of transcription by 6S RNAs: insights from the Escherichia coli and Bacillus subtilis model systems.
RNA Biol: 2014, 11(5);508-21
[PubMed:24786589]
[WorldCat.org]
[DOI]
(I p)
Amy T Cavanagh, Karen M Wassarman
6S RNA, a global regulator of transcription in Escherichia coli, Bacillus subtilis, and beyond.
Annu Rev Microbiol: 2014, 68;45-60
[PubMed:24742053]
[WorldCat.org]
[DOI]
(I p)
Amy T Cavanagh, Karen M Wassarman
6S-1 RNA function leads to a delay in sporulation in Bacillus subtilis.
J Bacteriol: 2013, 195(9);2079-86
[PubMed:23457253]
[WorldCat.org]
[DOI]
(I p)
Karen M Wassarman
6S RNA: a small RNA regulator of transcription.
Curr Opin Microbiol: 2007, 10(2);164-8
[PubMed:17383220]
[WorldCat.org]
[DOI]
(P p)
RNA thermometers
