Difference between revisions of "SigD regulon"
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= Genes in this [[regulon]] = | = Genes in this [[regulon]] = | ||
| − | * ''[[ | + | * as-''[[gdpP]]'' |
| − | |||
| − | |||
| − | |||
* ''[[cheV]]'' | * ''[[cheV]]'' | ||
| − | |||
| − | |||
* ''[[cwlQ]]'' | * ''[[cwlQ]]'' | ||
| + | * ''[[cwlS]]'' | ||
* ''[[degR]]'' | * ''[[degR]]'' | ||
* ''[[dltA]]'' | * ''[[dltA]]'' | ||
| Line 19: | Line 15: | ||
* ''[[dltE]]'' | * ''[[dltE]]'' | ||
* ''[[epr]]'' | * ''[[epr]]'' | ||
| − | * ''[[flgB]] | + | * ''[[flgB]]-[[flgC]]-[[fliE]]-[[fliF]]-[[fliG]]-[[fliH]]-[[fliI]]-[[fliJ]]-[[ylxF]]-[[fliK]]-[[flgD]]-[[flgE]]-[[fliL]]-[[fliM]]-[[fliY]]-[[cheY]]-[[fliZ]]-[[fliP]]-[[fliQ]]-[[fliR]]-[[flhB]]-[[flhA]]-[[flhF]]-[[flhG]]-[[cheB]]-[[cheA]]-[[cheW]]-[[cheC]]-[[cheD]]-[[sigD]]-[[swrB]]'' |
| − | |||
| − | |||
* ''[[flgK]]'' | * ''[[flgK]]'' | ||
* ''[[flgL]]'' | * ''[[flgL]]'' | ||
* ''[[flgM]]'' | * ''[[flgM]]'' | ||
| − | * ''[[ | + | * ''[[flgN]]'' |
| − | |||
| − | |||
* ''[[flhO]]'' | * ''[[flhO]]'' | ||
* ''[[flhP]]'' | * ''[[flhP]]'' | ||
* ''[[fliD]]'' | * ''[[fliD]]'' | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[fliS]]'' | * ''[[fliS]]'' | ||
* ''[[fliT]]'' | * ''[[fliT]]'' | ||
| − | |||
| − | |||
* ''[[hag]]'' | * ''[[hag]]'' | ||
* ''[[hemAT]]'' | * ''[[hemAT]]'' | ||
| Line 61: | Line 39: | ||
* ''[[nfrA]]'' | * ''[[nfrA]]'' | ||
* ''[[pgdS]]'' | * ''[[pgdS]]'' | ||
| + | * ''[[rnaC]]'' | ||
* ''[[sigA]]'' | * ''[[sigA]]'' | ||
| − | * ''[[ | + | * ''[[sivC]]'' |
| − | * ''[[ | + | * ''[[swrAA]]-[[minJ]]'' |
* ''[[tlpA]]'' | * ''[[tlpA]]'' | ||
* ''[[tlpB]]'' | * ''[[tlpB]]'' | ||
| Line 73: | Line 52: | ||
* ''[[yjcQ]]'' | * ''[[yjcQ]]'' | ||
* ''[[yjfB]]'' | * ''[[yjfB]]'' | ||
| − | + | ||
| − | |||
| − | |||
| − | |||
* ''[[yoaH]]'' | * ''[[yoaH]]'' | ||
* ''[[yscB]]'' | * ''[[yscB]]'' | ||
* ''[[yvyC]]'' | * ''[[yvyC]]'' | ||
* ''[[yvyF]]'' | * ''[[yvyF]]'' | ||
| − | + | ||
* ''[[ywcH]]'' | * ''[[ywcH]]'' | ||
* ''[[yxkC]]'' | * ''[[yxkC]]'' | ||
| + | ==newly added== | ||
| + | * [[yabN]]-[[yabO]] | ||
| + | * [[yjcM]] | ||
| + | * [[xkdA]] | ||
| + | * [[dgcW]] | ||
| + | * [[rnhB]]-[[ylqG]]-[[ylqH]] | ||
| + | * [[ylzI]] | ||
| + | * [[yoyG]] | ||
| + | * [[cgeD]]-[[cgeE]] | ||
| + | * [[yqaR]] | ||
| + | * [[yqaS]] | ||
| + | * [[ytlR]] | ||
| + | * [[yvaQ]] | ||
| + | * [[yvbI]] | ||
| + | * [[fliW]] | ||
| + | * [[smiA]] | ||
| + | * [[csrA]] | ||
| + | * [[yviE]] | ||
| + | * [[yxkH]] | ||
| + | |||
| + | = Comments = | ||
| + | * the [[SigD]] regulon is strongly overexpressed in a ''[[ymdB]]'' mutant (loss of bistable gene expression) {{PubMed|21856853}} | ||
| + | * expression of the [[SigD]] regulon is reduced upon overexpression of [[SlrA]], this can be suppressed by mutations in ''[[remA]]'', ''[[remB]]'', ''[[sinR]]'', or ''[[slrR]]'' {{PubMed|22329926}} | ||
| + | * expression of the [[SigD]] regulon is reduced in ''[[pnpA]]'' mutants due to reduced ''[[sigD]]'' expression {{PubMed|25099370}} | ||
| + | * the [[SigD regulon]] is not expressed in a ''[[rpsU]]'' mutant, this can be suppressed by inactivation of ''[[remA]]'' {{PubMed|25035996}} | ||
| + | |||
= Important publications on the [[SigD]] [[regulon]] = | = Important publications on the [[SigD]] [[regulon]] = | ||
| − | <pubmed>15033535,2111808,</pubmed> | + | <pubmed>15033535,2111808,22329926 21856853 25035996 26577401</pubmed> |
=Back to [[regulons]]= | =Back to [[regulons]]= | ||
Latest revision as of 15:41, 29 December 2015
| Regulator | |
Contents
Genes in this regulon
- as-gdpP
- cheV
- cwlQ
- cwlS
- degR
- dltA
- dltB
- dltC
- dltD
- dltE
- epr
- flgB-flgC-fliE-fliF-fliG-fliH-fliI-fliJ-ylxF-fliK-flgD-flgE-fliL-fliM-fliY-cheY-fliZ-fliP-fliQ-fliR-flhB-flhA-flhF-flhG-cheB-cheA-cheW-cheC-cheD-sigD-swrB
- flgK
- flgL
- flgM
- flgN
- flhO
- flhP
- fliD
- fliS
- fliT
- hag
- hemAT
- lytA
- lytB
- lytC
- lytD
- lytF
- mcpA
- mcpB
- mcpC
- motA
- motB
- nfrA
- pgdS
- rnaC
- sigA
- sivC
- swrAA-minJ
- tlpA
- tlpB
- tlpC
- ybdO
- yfmS
- yfmT
- yjcP
- yjcQ
- yjfB
newly added
- yabN-yabO
- yjcM
- xkdA
- dgcW
- rnhB-ylqG-ylqH
- ylzI
- yoyG
- cgeD-cgeE
- yqaR
- yqaS
- ytlR
- yvaQ
- yvbI
- fliW
- smiA
- csrA
- yviE
- yxkH
Comments
- the SigD regulon is strongly overexpressed in a ymdB mutant (loss of bistable gene expression) PubMed
- expression of the SigD regulon is reduced upon overexpression of SlrA, this can be suppressed by mutations in remA, remB, sinR, or slrR PubMed
- expression of the SigD regulon is reduced in pnpA mutants due to reduced sigD expression PubMed
- the SigD regulon is not expressed in a rpsU mutant, this can be suppressed by inactivation of remA PubMed
Important publications on the SigD regulon
Mario L Arrieta-Ortiz, Christoph Hafemeister, Ashley Rose Bate, Timothy Chu, Alex Greenfield, Bentley Shuster, Samantha N Barry, Matthew Gallitto, Brian Liu, Thadeous Kacmarczyk, Francis Santoriello, Jie Chen, Christopher D A Rodrigues, Tsutomu Sato, David Z Rudner, Adam Driks, Richard Bonneau, Patrick Eichenberger
An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network.
Mol Syst Biol: 2015, 11(11);839
[PubMed:26577401]
[WorldCat.org]
[DOI]
(I e)
Hiraku Takada, Masato Morita, Yuh Shiwa, Ryoma Sugimoto, Shota Suzuki, Fujio Kawamura, Hirofumi Yoshikawa
Cell motility and biofilm formation in Bacillus subtilis are affected by the ribosomal proteins, S11 and S21.
Biosci Biotechnol Biochem: 2014, 78(5);898-907
[PubMed:25035996]
[WorldCat.org]
[DOI]
(I p)
Loralyn M Cozy, Andrew M Phillips, Rebecca A Calvo, Ashley R Bate, Yi-Huang Hsueh, Richard Bonneau, Patrick Eichenberger, Daniel B Kearns
SlrA/SinR/SlrR inhibits motility gene expression upstream of a hypersensitive and hysteretic switch at the level of σ(D) in Bacillus subtilis.
Mol Microbiol: 2012, 83(6);1210-28
[PubMed:22329926]
[WorldCat.org]
[DOI]
(I p)
Christine Diethmaier, Nico Pietack, Katrin Gunka, Christoph Wrede, Martin Lehnik-Habrink, Christina Herzberg, Sebastian Hübner, Jörg Stülke
A novel factor controlling bistability in Bacillus subtilis: the YmdB protein affects flagellin expression and biofilm formation.
J Bacteriol: 2011, 193(21);5997-6007
[PubMed:21856853]
[WorldCat.org]
[DOI]
(I p)
Masakuni Serizawa, Hiroki Yamamoto, Hirotake Yamaguchi, Yasutaro Fujita, Kazuo Kobayashi, Naotake Ogasawara, Junichi Sekiguchi
Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses.
Gene: 2004, 329;125-36
[PubMed:15033535]
[WorldCat.org]
[DOI]
(P p)
L M Márquez, J D Helmann, E Ferrari, H M Parker, G W Ordal, M J Chamberlin
Studies of sigma D-dependent functions in Bacillus subtilis.
J Bacteriol: 1990, 172(6);3435-43
[PubMed:2111808]
[WorldCat.org]
[DOI]
(P p)
