Difference between revisions of "Skin element"
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{{CategoryTree | {{CategoryTree | ||
|Parents= | |Parents= | ||
| − | * 5. Prophages and mobile genetic elements | + | * 5. [[Prophages and mobile genetic elements]] |
| − | ** 5.1. Prophages | + | ** 5.1. [[Prophages]] |
|Neighbours= | |Neighbours= | ||
* 5.1.1. [[PBSX prophage]] | * 5.1.1. [[PBSX prophage]] | ||
* 5.1.2. [[SPß prophage]] | * 5.1.2. [[SPß prophage]] | ||
* 5.1.3. [[Skin element]] | * 5.1.3. [[Skin element]] | ||
| − | * 5.1.4. [[Phage-related functions]] | + | * 5.1.4. [[Prophage 1]] |
| + | * 5.1.5. [[Prophage 3]] | ||
| + | * 5.1.6. [[Phage-related functions]] | ||
|Related= | |Related= | ||
| − | + | * [[SknR regulon]] | |
|}} | |}} | ||
| + | |||
| + | == Important note== | ||
| + | * In 168, the Skin element disrupts the ''[[sigK]]'' gene | ||
| + | * A strain devoid of the [[Skin element]] (1A884) is available at the [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A884&Search=1A884 BGSC], {{PubMed|9537360}} | ||
| + | * A strain devoid of [[PBSX prophage]] , [[SP-beta prophage]] and the [[Skin element]] (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in [[Jan Maarten van Dijl]]'s lab {{PubMed|12949151}} | ||
| + | * deletion of the skin element results in an increased rate of spontaneous [[germination]] due to lower expression of [[GerE]] {{PubMed|26279233}} | ||
| + | |||
| + | == Genes in this functional category == | ||
| + | * ''[[arsB]]'' | ||
| + | * ''[[arsC]]'' | ||
| + | * ''[[arsR]]'' | ||
| + | * ''[[as-bsrH]]'' | ||
| + | *'' [[bsrH]]'' | ||
| + | * ''[[cwlA]]'' | ||
| + | * ''[[phrE]]'' | ||
| + | * ''[[rapE]]'' | ||
| + | * ''[[ratA]]'' | ||
| + | * ''[[sknR]]'' | ||
| + | * ''[[spoIVCA]]'' | ||
| + | * ''[[txpA]]'' | ||
| + | * ''[[yqaB]]'' | ||
| + | * ''[[yqaC]]'' | ||
| + | * ''[[yqaD]]'' | ||
| + | * ''[[yqaF]]'' | ||
| + | * ''[[yqaG]]'' | ||
| + | * ''[[yqaH]]'' | ||
| + | * ''[[yqaI]]'' | ||
| + | * ''[[yqaJ]]'' | ||
| + | * ''[[yqaK]]'' | ||
| + | * ''[[yqaL]]'' | ||
| + | * ''[[yqaM]]'' | ||
| + | * ''[[yqaN]]'' | ||
| + | * ''[[yqaO]]'' | ||
| + | * ''[[yqaP]]'' | ||
| + | * ''[[yqaQ]]'' | ||
| + | * ''[[yqaR]]'' | ||
| + | * ''[[yqaS]]'' | ||
| + | * ''[[yqaT]]'' | ||
| + | * ''[[yqbA]]'' | ||
| + | * ''[[yqbB]]'' | ||
| + | * ''[[yqbC]]'' | ||
| + | * ''[[yqbD]]'' | ||
| + | * ''[[yqbE]]'' | ||
| + | * ''[[yqbF]]'' | ||
| + | * ''[[yqbG]]'' | ||
| + | * ''[[yqbH]]'' | ||
| + | * ''[[yqbI]]'' | ||
| + | * ''[[yqbJ]]'' | ||
| + | * ''[[yqbK]]'' | ||
| + | * ''[[yqbM]]'' | ||
| + | * ''[[yqbN/1]]'' | ||
| + | * ''[[yqbN/2]]'' | ||
| + | * ''[[yqbO]]'' | ||
| + | * ''[[yqbP]]'' | ||
| + | * ''[[yqbQ]]'' | ||
| + | * ''[[yqbR]]'' | ||
| + | * ''[[yqbS]]'' | ||
| + | * ''[[yqbT]]'' | ||
| + | * ''[[yqcA]]'' | ||
| + | * ''[[yqcB]]'' | ||
| + | * ''[[yqcC]]'' | ||
| + | * ''[[yqcD]]'' | ||
| + | * ''[[yqcE]]'' | ||
| + | * ''[[yqcF]]'' | ||
| + | * ''[[yqcG]]'' | ||
| + | * ''[[yqcI]]'' | ||
| + | * ''[[yqcK]]'' | ||
| + | * ''[[yqdA]]'' | ||
| + | * ''[[yqxG]]'' | ||
| + | * ''[[yqxH]]'' | ||
| + | * ''[[yqxI]]'' | ||
| + | * ''[[yqxJ]]'' | ||
| + | * ''[[yqzI]]'' | ||
| + | * ''[[yqzN]]'' | ||
| + | * ''[[yqzO]]'' | ||
| + | |||
| + | ==Key publications== | ||
| + | <pubmed> 20889742 9537360 8969508 8760915 7704261 12949151 </pubmed> | ||
| + | =Back to [[categories]]= | ||
Latest revision as of 15:19, 19 August 2015
| Parent categories | |
| Neighbouring categories |
|
| Related categories | |
Contents
Important note
- In 168, the Skin element disrupts the sigK gene
- A strain devoid of the Skin element (1A884) is available at the BGSC, PubMed
- A strain devoid of PBSX prophage , SP-beta prophage and the Skin element (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in Jan Maarten van Dijl's lab PubMed
- deletion of the skin element results in an increased rate of spontaneous germination due to lower expression of GerE PubMed
Genes in this functional category
- arsB
- arsC
- arsR
- as-bsrH
- bsrH
- cwlA
- phrE
- rapE
- ratA
- sknR
- spoIVCA
- txpA
- yqaB
- yqaC
- yqaD
- yqaF
- yqaG
- yqaH
- yqaI
- yqaJ
- yqaK
- yqaL
- yqaM
- yqaN
- yqaO
- yqaP
- yqaQ
- yqaR
- yqaS
- yqaT
- yqbA
- yqbB
- yqbC
- yqbD
- yqbE
- yqbF
- yqbG
- yqbH
- yqbI
- yqbJ
- yqbK
- yqbM
- yqbN/1
- yqbN/2
- yqbO
- yqbP
- yqbQ
- yqbR
- yqbS
- yqbT
- yqcA
- yqcB
- yqcC
- yqcD
- yqcE
- yqcF
- yqcG
- yqcI
- yqcK
- yqdA
- yqxG
- yqxH
- yqxI
- yqxJ
- yqzI
- yqzN
- yqzO
Key publications
