Difference between revisions of "YgzD"

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=== Additional information===
 
=== Additional information===
 
 
  
 
=The protein=
 
=The protein=
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* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
* '''Protein family:'''
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* '''Protein family:''' [[transcription factors of the Xre family|Xre family]]
  
 
* '''Paralogous protein(s):'''
 
* '''Paralogous protein(s):'''
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=References=
 
=References=
 
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<pubmed>23504016, </pubmed>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=DetailsSearch&term=subtilis+ygzD&log$=activity search PubMed]
 
 
 
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 17:18, 11 June 2014

  • Description: similar to transcription regulator (Xre family)

Gene name ygzD
Synonyms
Essential -
Product putative HTH-type transcriptional regulator
Function unknown
Gene expression levels in SubtiExpress: ygzD
MW, pI 7.6 kda, 7.833
Gene length, protein length 198 bp, 66 aa
Immediate neighbours ygaO, trnSL-Gly1
Gene sequence (+200bp) Protein sequence
Genetic context
File:YgzD context.gif
[None Expression at a glance]   PubMed
YgzD expression.png















Categories containing this gene/protein

transcription factors and their control

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU08899

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: no entry

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Semen A Leyn, Marat D Kazanov, Natalia V Sernova, Ekaterina O Ermakova, Pavel S Novichkov, Dmitry A Rodionov
Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis.
J Bacteriol: 2013, 195(11);2463-73
[PubMed:23504016] [WorldCat.org] [DOI] (I p)