Difference between revisions of "FbpC"
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| − | * '''Description:''' small protein, acts as RNA chaperone for | + | * '''Description:''' small protein, acts as RNA chaperone for ''[[fsrA]]'' <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|''fbpC'' | |''fbpC'' | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''mrgC '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || write here | |style="background:#ABCDEF;" align="center"| '''Essential''' || write here | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || small protein, acts as RNA chaperone for | + | |style="background:#ABCDEF;" align="center"| '''Product''' || small protein, acts as RNA chaperone for ''[[fsrA]]'' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || RNA chaperone | |style="background:#ABCDEF;" align="center"|'''Function''' || RNA chaperone | ||
| + | |- | ||
| + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=FbpC FbpC]''' | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || xx,x kDa, 9.1 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || xx,x kDa, 9.1 | ||
| Line 18: | Line 20: | ||
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 87 bp, 29 amino acids | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 87 bp, 29 amino acids | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dynA]]'', ''[[bpsB]]'' |
|- | |- | ||
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt Gene sequence (+200bp) ]''' | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt Gene sequence (+200bp) ]''' | ||
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<br/><br/> | <br/><br/> | ||
| + | |||
| + | = [[Categories]] containing this gene/protein = | ||
| + | {{SubtiWiki category|[[acquisition of iron]]}}, | ||
| + | {{SubtiWiki category|[[iron metabolism]]}}, | ||
| + | {{SubtiWiki category|[[RNA chaperones]]}}, | ||
| + | {{SubtiWiki category|[[short peptides]]}} | ||
| + | |||
| + | = This gene is a member of the following [[regulons]] = | ||
| + | {{SubtiWiki regulon|[[Fur regulon]]}} | ||
=The gene= | =The gene= | ||
| Line 38: | Line 49: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | * transcription profile of a ''[[fbpC]]'' mutant strain: [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27416 GEO] {{PubMed|22389480}} | ||
=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?] | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?] | ||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
* '''SubtiList entry:''' | * '''SubtiList entry:''' | ||
| + | |||
| + | * '''GEO entry:''' [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27416 GEO] {{PubMed|22389480}} | ||
=== Additional information=== | === Additional information=== | ||
| + | |||
| + | |||
=The protein= | =The protein= | ||
| Line 69: | Line 87: | ||
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?] | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?] | ||
* '''Structure:''' | * '''Structure:''' | ||
| Line 92: | Line 112: | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** induced upon iron starvation ([[Fur]]) {{PubMed|18697947}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[Fur]]: transcription repression {{PubMed|18697947}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 117: | Line 139: | ||
=References= | =References= | ||
| − | <pubmed>18697947 | + | <pubmed>18697947 22389480 </pubmed> |
[[Category:short peptide]] | [[Category:short peptide]] | ||
Latest revision as of 11:52, 8 April 2014
- Description: small protein, acts as RNA chaperone for fsrA
| Gene name | fbpC |
| Synonyms | mrgC |
| Essential | write here |
| Product | small protein, acts as RNA chaperone for fsrA |
| Function | RNA chaperone |
| Metabolic function and regulation of this protein in SubtiPathways: FbpC | |
| MW, pI | xx,x kDa, 9.1 |
| Gene length, protein length | 87 bp, 29 amino acids |
| Immediate neighbours | dynA, bpsB |
| Gene sequence (+200bp) | Protein sequence |
Genetic context 
| |
Contents
Categories containing this gene/protein
acquisition of iron, iron metabolism, RNA chaperones, short peptides
This gene is a member of the following regulons
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry:
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry: no entry
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Gregory T Smaldone, Olga Revelles, Ahmed Gaballa, Uwe Sauer, Haike Antelmann, John D Helmann
A global investigation of the Bacillus subtilis iron-sparing response identifies major changes in metabolism.
J Bacteriol: 2012, 194(10);2594-605
[PubMed:22389480]
[WorldCat.org]
[DOI]
(I p)
Ahmed Gaballa, Haike Antelmann, Claudio Aguilar, Sukhjit K Khakh, Kyung-Bok Song, Gregory T Smaldone, John D Helmann
The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins.
Proc Natl Acad Sci U S A: 2008, 105(33);11927-32
[PubMed:18697947]
[WorldCat.org]
[DOI]
(I p)
