Difference between revisions of "DnaA"

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(New page: * '''Description:''' write here <br/><br/> {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''genE'' |- |style="background:#ABC...)
 
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* '''Description:''' write here <br/><br/>
 
* '''Description:''' write here <br/><br/>
  
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{| align="right" border="1" cellpadding="2"  
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    {| align="right" border="1" cellpadding="2"  
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|-
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    |-
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
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    |style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''genE''
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    |''dnaA''
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|-
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    |-
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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    |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''dnaH, dnaJ, dnaK ''
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|-
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    |-
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|style="background:#ABCDEF;" align="center"| '''Essential''' || write here
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    |style="background:#ABCDEF;" align="center"| '''Essential''' ||  
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|-
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    |-
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|style="background:#ABCDEF;" align="center"| '''Product''' || write here
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    |style="background:#ABCDEF;" align="center"| '''Product''' ||  
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|-
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    |-
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|style="background:#ABCDEF;" align="center"|'''Function''' || write here
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    |style="background:#ABCDEF;" align="center"|'''Function''' || initiation of chromosome replication
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|-
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    |-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || xx,x kDa, y.yy
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    |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 50 kDa, 6.035 
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|-
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    |-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || aaa bp, bbb amino acids
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    |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1338 bp, 446 aa
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|-
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    |-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[genA]]'', ''[[genB]]''
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    |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' ||  
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|-
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    |-
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
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    |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/dnaA_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_protein.txt Protein sequence]'''
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    |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/dnaA_protein.txt Protein sequence]'''
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|-
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    |-
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|colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]]
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    |colspan="2" | '''Genetic context''' <br/> [[Image:dnaA_context.gif]]
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|-
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    |-
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|}
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    |}
  
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__TOC__
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    __TOC__
  
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<br/><br/>
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    <br/><br/>
  
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=The gene=
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    =The gene=
  
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=== Basic information ===
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    === Basic information ===
  
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* '''Coordinates (CDS):'''
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    * '''Coordinates:'''
  
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===Phenotypes of a mutant ===
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    ===Phenotypes of a mutant ===
  
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=== Database entries ===
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    === Database entries ===
  
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rocG.html]
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    * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dnaA.html]
  
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* '''SubtiList entry:'''
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    * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10065]
  
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=== Additional information===
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    === Additional information===
  
  
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=The protein=
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    =The protein=
  
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=== Basic information/ Evolution ===
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    === Basic information/ Evolution ===
  
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* '''Catalyzed reaction/ biological activity:'''  
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    * '''Catalyzed reaction/ biological activity:'''  
  
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* '''Protein family:'''
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    * '''Protein family:'''
  
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* '''Paralogous protein(s):'''
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    * '''Paralogous protein(s):'''
  
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=== Extended information on the protein ===
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    === Extended information on the protein ===
  
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* '''Kinetic information:'''
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    * '''Kinetic information:'''
  
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* '''Domains:'''  
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    * '''Domains:'''  
  
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* '''Modification:'''
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    * '''Modification:'''
  
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* '''Cofactor(s):'''
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    * '''Cofactor(s):'''
  
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* '''Effectors of protein activity:'''
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    * '''Effectors of protein activity:'''
  
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* '''Interactions:'''
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    * '''Interactions:'''
  
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* '''Localization:'''
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    * '''Localization:'''
  
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=== Database entries ===
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    === Database entries ===
  
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* '''Structure:'''
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    * '''Structure:'''
  
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* '''Swiss prot entry:'''
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    * '''Swiss prot entry:'''
  
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* '''KEGG entry:'''
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    * '''KEGG entry:'''
  
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* '''E.C. number:'''
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    * '''E.C. number:'''
  
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=== Additional information===
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    === Additional information===
  
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=Expression and regulation=
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    =Expression and regulation=
  
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* '''Operon:'''  
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    * '''Operon:'''  
  
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* '''Sigma factor:'''  
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    * '''Sigma factor:'''  
  
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* '''Regulation:'''  
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    * '''Regulation:'''  
  
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* '''Regulatory mechanism:'''  
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    * '''Regulatory mechanism:'''  
  
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* '''Additional information:'''  
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    * '''Additional information:'''  
  
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=Biological materials =
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    =Biological materials =
  
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* '''Mutant:'''
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    * '''Mutant:'''
  
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* '''Expression vector:'''
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    * '''Expression vector:'''
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+
           
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* '''lacZ fusion:'''
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    * '''lacZ fusion:'''
  
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* '''GFP fusion:'''
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    * '''GFP fusion:'''
  
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* '''two-hybrid system:'''  
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    * '''two-hybrid system:'''  
  
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* '''Antibody:'''
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    * '''Antibody:'''
  
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=Labs working on this gene/protein=
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    =Labs working on this gene/protein=
  
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=Your additional remarks=
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    =Your additional remarks=
  
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=References=
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    =References=
  
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# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
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    # Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 17:15, 29 January 2009

  • Description: write here

Gene name dnaA
Synonyms dnaH, dnaJ, dnaK
Essential
Product
Function initiation of chromosome replication
MW, pI 50 kDa, 6.035
Gene length, protein length 1338 bp, 446 aa
Immediate neighbours
Gene sequence (+200bp) Protein sequence
Genetic context
DnaA context.gif 


   



   =The gene=

   === Basic information ===

   * Coordinates:

   ===Phenotypes of a mutant ===

   === Database entries ===

   * DBTBS entry: [1]

   * SubtiList entry: [2]

   === Additional information===



   =The protein=

   === Basic information/ Evolution ===

   * Catalyzed reaction/ biological activity: 

   * Protein family:

   * Paralogous protein(s):

   === Extended information on the protein ===

   * Kinetic information:	

   * Domains: 

   * Modification:

   * Cofactor(s):

   * Effectors of protein activity:

   * Interactions:

   * Localization:

   === Database entries ===

   * Structure:	

   * Swiss prot entry:

   * KEGG entry:

   * E.C. number:

   === Additional information===

   =Expression and regulation=

   * Operon: 

   * Sigma factor: 

   * Regulation: 

   * Regulatory mechanism: 

   * Additional information: 

   =Biological materials =

   * Mutant:

   * Expression vector:
           
   * lacZ fusion:

   * GFP fusion:

   * two-hybrid system: 

   * Antibody:

   =Labs working on this gene/protein=

   =Your additional remarks=

   =References=

   # Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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