lplD

lplD
168

alpha-galacturonidase

Locus
BSU_07130
Molecular weight
49.32 kDa
Isoelectric point
5.36
Protein length
446 aaSequenceBlast
Gene length
1341 bpSequenceBlast
Function
utilization of pectin
Product
alpha-galacturonidase
Essential
no
Synonyms
lplD
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1486 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
782,958  784,298
The protein
Catalyzed reaction/ biological activity
cleavage of alpha-1,4-di-galacturonate PubMed
[(1→4)-α-D-galacturonosyl](n) + H2O --> [(1→4)-α-D-galacturonosyl](n-1) + α-D-galacturonate (according to UniProt)
Protein family
Glycosyl hydrolase 4 family (according to UniProt)
Domains
active site motif: CHEV PubMed
Cofactors
NAD, Mn(2+) PubMed
Structure
3FEF (PDB)
P39130 (AlphaFold)
Expression and Regulation
Operons
Genes
lplD-yetF
Description
PubMed
Sigma factors
SigF: sigma factor, PubMed, in sigF regulon
Open in new tab

lplD->yetF

2025-03-11 02:28:46

Bzhu

79

4c1645379912da5289ffa49e513afb061703f98c

7A053F3442B7772722A340FD92B321316523B3F1

Biological materials
Mutant
BKE07130 (lplD::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_ACTGATATGAAACACTCCCT,  downstream forward: _UP4_TGAGCTTGCCGATTAGCTCT
BKK07130 (lplD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_ACTGATATGAAACACTCCCT,  downstream forward: _UP4_TGAGCTTGCCGATTAGCTCT
References
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18B09A645AC8E13A1AD3B73A0C828E5A0F5D42BB

Page visits: 2900

Time of last update: 2025-04-06 16:28:45

Author of last update: Melvin.boenninger