ydaG

ydaG
168

putative pyridoxamine 5'-phosphate oxidase , general stress protein, required for protection against paraquat stress

Locus
BSU_04220
Molecular weight
15.00 kDa
Isoelectric point
5.195
Protein length
140 aaSequenceBlast
Gene length
423 bpSequenceBlast
Function
survival of stress conditions
Product
putative pyridoxamine 5'-phosphate oxidase
Essential
no
Synonyms
ydaG, yzzA
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG3871 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
473,803  474,225
The protein
Structure
3DB0 (PDB) (from Listeria innocua, 43% identity)
P80238 (AlphaFold)
Expression and Regulation
Operons
Genes
ydaF-ydaG
Description
PubMed
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ydaF→ydaG

2025-04-07 15:15:37

Jstuelk

73

274d05bc99b84129af0dc4c123bf28394b0935e6

27CF20D9A51B37DB84B21F3DD0F0554697F8DAF7

Genes
ydaG
Description
PubMed
Regulation
induced under stress conditions (SigB) PubMed
Sigma factors
SigB: sigma factor, PubMed, in sigB regulon
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ydaG

2025-03-27 01:42:53

ghost

86

75faf45eea88c00b724b27eb678936d51a833958

3DD1524BC6DCA62AD0E50B4446CB41244347266A

Genes
ydaD-ydaE-ydaF-ydaG
Description
PubMed
Regulation
induced by stress (SigB) PubMed
Expression
expression is increased upon depletion of depletion of tRNA maturation factors rnpB or rnz PubMed
Sigma factors
SigB: sigma factor, PubMed, in sigB regulon
Open in new tab

ydaD→ydaG

2025-04-04 01:52:57

Jstuelk

90

0F01F3D4A72C13FC2BD8814FCB16A6972198E29F

A2B50F578CB3D7FDB3773EE82697C8F07A97C986

Biological materials
Mutant
MGNA-C102 (ydaG::erm), available at the NBRP B. subtilis, Japan
BKE04220 (ydaG::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTCGAATCACTCCTTTT,  downstream forward: _UP4_TAAAAAATTTGTGTTTTCAG
BKK04220 (ydaG::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTCGAATCACTCCTTTT,  downstream forward: _UP4_TAAAAAATTTGTGTTTTCAG
References
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29342783A375260C5DAE920FBF6EC6EFD2D54DDE

Page visits: 4052

Time of last update: 2025-04-10 05:29:22

Author of last update: Jstuelk