ydaG
168

putative pyridoxamine 5'-phosphate oxidase , general stress protein, required for protection against paraquat stress

Locus

BSU_04220

Molecular weight

15.00 kDa

Isoelectric point

5.195

Protein length

140 aaSequenceBlast

Gene length

423 bpSequenceBlast

Function

survival of stress conditions

Product

putative pyridoxamine 5'-phosphate oxidase

Essential

Synonyms

ydaG, yzzA

Outlinks

BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

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Categories containing this gene/protein

List of homologs in different organisms, belongs to COG3871 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene

Coordinates

473,803 474,225

The protein

Structure

3DB0 (PDB) (from Listeria innocua, 43% identity)

P80238 (AlphaFold)

Expression and Regulation

Operons

Genes

ydaF-ydaG

Description

PubMed

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Genes

ydaG

Description

PubMed

Regulation

induced under stress conditions (SigB) PubMed

Sigma factors

SigB: sigma factor, PubMed, in sigB regulon

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Genes

ydaD-ydaE-ydaF-ydaG

Description

PubMed

Regulation

induced by stress (SigB) PubMed

Expression

expression is increased upon depletion of depletion of tRNA maturation factors rnpB or rnz PubMed

Sigma factors

SigB: sigma factor, PubMed, in sigB regulon

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Biological materials

Mutant

MGNA-C102 (ydaG::erm), available at the NBRP B. subtilis, Japan

BKE04220 (ydaG::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCTCGAATCACTCCTTTT, downstream forward: _UP4_TAAAAAATTTGTGTTTTCAG

BKK04220 (ydaG::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCTCGAATCACTCCTTTT, downstream forward: _UP4_TAAAAAATTTGTGTTTTCAG

References

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Time of last update: 2025-04-10 08:51:46

Author of last update: Jstuelk

ydaG 168

ydaG
168