ybgF

ybgF
168

uncharacterized amino acid permase

Locus
BSU_02400
Molecular weight
50.78 kDa
Isoelectric point
9.6
Protein length
470 aaSequenceBlast
Gene length
1413 bpSequenceBlast
Function
unknown
Product
unknown
Essential
no
Synonyms
ybgF
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

List of homologs in different organisms, belongs to COG0833 (Galperin et al., 2021)

Gene
Coordinates
260,123 → 261,535
The protein
Protein family
amino acid-polyamine-organocation (APC) superfamily (according to UniProt)
Structure
5OQT (PDB) (arginine transporter from Geobacillus kaustophilus, 23% identity) PubMed
O31462 (AlphaFold)
Paralogous protein(s)
YdgF, AapA, GabP, AlaP, HutM, YvbW, AimB, RocC, RocE
Localization
cell membrane (according to UniProt)
Expression and Regulation
Operons
Genes
ybgF
Description
PubMed
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ybgF

2025-04-03 06:56:54

Jstuelk

88

5a001b8de828bf0d6364cc445d227c94afa3a57b

4AC14AA74930D013A563E900E58EC4E20AC21AD5

Genes
ybgG-ybgF
Description
PubMed
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ybgG→ybgF

2025-04-03 13:00:32

Jstuelk

215

41f6c774775ca780a60db5239c1531035f198834

A90C0380473D204544DD5DB6BFAD9D30E3423A8E

Biological materials
Mutant
GP3040 ΔybgF::cat, available in Jörg Stülke's lab PubMed
MGNA-B940 (ybgF::erm), available at the NBRP B. subtilis, Japan
BKE02400 (ΔybgF::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTTTTTCCAACTTTCTA,  downstream forward: _UP4_TAAAAAGAACCTGCCTCCGG
BKK02400 (ΔybgF::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTTTTTCCAACTTTCTA,  downstream forward: _UP4_TAAAAAGAACCTGCCTCCGG
LacZ fusion
pGP3819 (in pAC7), available in Jörg Stülke's lab
References
Research papers
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B6A920650919D5BBBD75CCA58C30A0D8ECE64DA3

Page visits: 3402

Time of last update: 2025-04-05 18:06:49

Author of last update: Jstuelk