Difference between revisions of "DnaK"

From SubtiWiki
Jump to: navigation, search
Line 39: Line 39:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
+
<br/><br/>
<br/><br/><br/><br/>
 
 
 
 
 
<br/><br/><br/><br/><br/><br/>
 
  
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
 
{{SubtiWiki category|[[chaperones/ protein folding]]}},
 
{{SubtiWiki category|[[chaperones/ protein folding]]}},
 
{{SubtiWiki category|[[heat shock proteins]]}},
 
{{SubtiWiki category|[[heat shock proteins]]}},
{{SubtiWiki category|[[phosphoproteins]]}}
+
{{SubtiWiki category|[[phosphoproteins]]}},
 +
[[most abundant proteins]]
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
Line 68: Line 65:
  
 
=== Additional information===
 
=== Additional information===
 
 
 
  
 
=The protein=
 
=The protein=
Line 86: Line 80:
 
* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
* '''Domains:'''  
+
* '''[[Domains]]:'''  
  
 
* '''Modification:''' phosphorylated on ser/ thr/ tyr [http://www.ncbi.nlm.nih.gov/pubmed/17726680 PubMed]  
 
* '''Modification:''' phosphorylated on ser/ thr/ tyr [http://www.ncbi.nlm.nih.gov/pubmed/17726680 PubMed]  
  
* '''Cofactor(s):'''
+
* '''[[Cofactors]]:'''
  
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
Line 120: Line 114:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dnaK_2626112_2627947_-1 dnaK] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dnaK_2626112_2627947_-1 dnaK] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigA]] {{PubMed|1339421}}
+
* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|1339421}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 129: Line 123:
  
 
* '''Additional information:'''
 
* '''Additional information:'''
 +
** belongs to the 100 [[most abundant proteins]] {{PubMed|15378759}}
  
 
=Biological materials =
 
=Biological materials =
Line 151: Line 146:
  
 
=References=
 
=References=
'''Additional publications:''' {{PubMed|22268681}}
+
<pubmed>1339421,12224648,10383760,9023197,7540247,7592421 ,16479537, 1339421 ,17726680 22268681 15378759</pubmed>
<pubmed>1339421,12224648,10383760,9023197,7540247,7592421 ,16479537, 1339421 ,17726680 </pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 14:36, 5 March 2014

  • Description: class I heat-shock protein (molecular chaperone)

Gene name dnaK
Synonyms
Essential no
Product class I heat-shock protein (molecular chaperone)
Function protein quality control
Gene expression levels in SubtiExpress: dnaK
Interactions involving this protein in SubtInteract: DnaK
Metabolic function and regulation of this protein in SubtiPathways:
dnaK
MW, pI 65 kDa, 4.571
Gene length, protein length 1833 bp, 611 aa
Immediate neighbours surC, grpE
Sequences Protein DNA DNA_with_flanks
Genetic context
DnaK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
DnaK expression.png















Categories containing this gene/protein

chaperones/ protein folding, heat shock proteins, phosphoproteins, most abundant proteins

This gene is a member of the following regulons

HrcA regulon

The gene

Basic information

  • Locus tag: BSU25470

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: heat shock protein 70 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification: phosphorylated on ser/ thr/ tyr PubMed
  • Effectors of protein activity:
  • Localization:
    • cytoplasm (according to Swiss-Prot)
    • membrane-proximal (Spotty) PubMed
    • recruited to the membrane after ethanol stress PubMed

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab
  • Antibody:

Labs working on this gene/protein

Wolfgang Schumann, Bayreuth University, Germany Homepage

Your additional remarks

References