Difference between revisions of "YwcC"

From SubtiWiki
Jump to: navigation, search
Line 1: Line 1:
* '''Description:''' transcription repressor (TetR family), controls ''[[slrA]]'' expression <br/><br/>
+
* '''Description:''' transcription repressor ([[TetR family]]), controls ''[[slrA]]'' expression <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
Line 10: Line 10:
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || transcription repressor (TetR family)  
+
|style="background:#ABCDEF;" align="center"| '''Product''' || transcription repressor ([[TetR family]])  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SlrA]] expression
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SlrA]] expression
Line 39: Line 39:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
+
<br/><br/>
<br/><br/><br/><br/><br/><br/>
 
  
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
Line 72: Line 71:
 
* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
* '''Protein family:'''
+
* '''Protein family:''' [[TetR family]]
  
 
* '''Paralogous protein(s):'''
 
* '''Paralogous protein(s):'''
Line 111: Line 110:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywcC_3922292_3922963_-1 ywcC] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywcC_3922292_3922963_-1 ywcC] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
+
* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 138: Line 137:
  
 
=References=
 
=References=
 
+
==Reviews==
 +
<pubmed>24006471 </pubmed>
 +
==Original publications==
 
<pubmed>18647168,22383849,22893383, 19788541 </pubmed>
 
<pubmed>18647168,22383849,22893383, 19788541 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:38, 6 September 2013

  • Description: transcription repressor (TetR family), controls slrA expression

Gene name ywcC
Synonyms ipa-33d
Essential no
Product transcription repressor (TetR family)
Function control of SlrA expression
Gene expression levels in SubtiExpress: ywcC
Regulation of this protein in SubtiPathways:
Biofilm
MW, pI 25 kDa, 8.466
Gene length, protein length 669 bp, 223 aa
Immediate neighbours gtaC, slrA
Sequences Protein DNA DNA_with_flanks
Genetic context
YwcC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YwcC expression.png















Categories containing this gene/protein

transcription factors and their control, biofilm formation

This gene is a member of the following regulons

The YwcC regulon:

The gene

Basic information

  • Locus tag: BSU38220

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Original publications