Difference between revisions of "QdoR"
| Line 1: | Line 1: | ||
| − | * '''Description:''' transcriptional regulator, control of ''[[qdoI]]-[[yxaH]]'' and ''[[lmrA]]-[[lmrB]]'' <br/><br/> | + | * '''Description:''' transcriptional regulator ([[TetR family]]), control of ''[[qdoI]]-[[yxaH]]'' and ''[[lmrA]]-[[lmrB]]'' <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 37: | Line 37: | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
| − | + | <br/><br/> | |
| − | |||
| − | |||
| − | |||
| − | |||
= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
| Line 76: | Line 72: | ||
* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | * '''Protein family:''' | + | * '''Protein family:''' [[TetR family]] |
* '''Paralogous protein(s):''' [[LmrA]] | * '''Paralogous protein(s):''' [[LmrA]] | ||
| Line 114: | Line 110: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxaF_4107352_4107927_-1 qdoR] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxaF_4107352_4107927_-1 qdoR] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 145: | Line 141: | ||
=References= | =References= | ||
| + | ==Reviews== | ||
| + | <pubmed>24006471 </pubmed> | ||
| + | ==Original publications== | ||
<pubmed>17483215,10746760,21737930</pubmed> | <pubmed>17483215,10746760,21737930</pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 16:30, 6 September 2013
- Description: transcriptional regulator (TetR family), control of qdoI-yxaH and lmrA-lmrB
| Gene name | qdoR |
| Synonyms | yxaF |
| Essential | no |
| Product | transcriptional regulator |
| Function | control of quercetin utilization |
| Gene expression levels in SubtiExpress: qdoR | |
| MW, pI | 20 kDa, 6.111 |
| Gene length, protein length | 573 bp, 191 aa |
| Immediate neighbours | qdoI, yxnA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transcription factors and their control, resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)
This gene is a member of the following regulons
The QdoR regulon:
The gene
Basic information
- Locus tag: BSU39990
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: TetR family
- Paralogous protein(s): LmrA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity: flavonoids such as quercetin act as molecular inducers and result in release from DNA targets PubMed
Database entries
- Structure: 1SGM
- UniProt: P42105
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: qdoR PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
- Yasutaro Fujita, University of Fukuyama, Japan
Your additional remarks
References
Reviews
Original publications
