Difference between revisions of "YfiR"
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| − | * '''Description:''' | + | * '''Description:''' transcriptional regulator ([[TetR family]]) of the ''[[yfiS]]-[[yfiR]]'' operon<br/><br/> |
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
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| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator ([[TetR family]]) |
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| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || control of ''[[yfiS]]'' expression |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08370 yfiR] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08370 yfiR] | ||
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=== Database entries === | === Database entries === | ||
| − | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1RKT 1RKT] | + | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1RKT 1RKT] {{PubMed|16862575}} |
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31560 O31560] | * '''UniProt:''' [http://www.uniprot.org/uniprot/O31560 O31560] | ||
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[yfiS]]-[[yfiR]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yfiSR.html DBTBS]) | + | * '''Operon:''' |
| + | ** ''[[yfiS]]-[[yfiR]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yfiSR.html DBTBS]) | ||
| + | ** ''[[yfiR]]'' {{PubMed|22383849}} | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yfiR_911964_912581_-1 yfiR] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yfiR_911964_912581_-1 yfiR] {{PubMed|22383849}} | ||
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=References= | =References= | ||
| − | + | <pubmed> 16862575 22383849</pubmed> | |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:42, 18 August 2013
- Description: transcriptional regulator (TetR family) of the yfiS-yfiR operon
| Gene name | yfiR |
| Synonyms | |
| Essential | no |
| Product | transcriptional regulator (TetR family) |
| Function | control of yfiS expression |
| Gene expression levels in SubtiExpress: yfiR | |
| MW, pI | 23 kDa, 5.02 |
| Gene length, protein length | 615 bp, 205 aa |
| Immediate neighbours | yfiQ, yfiS |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
transcription factors and their control
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU08370
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- UniProt: O31560
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
