Difference between revisions of "YjcK"
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[yjcL]]-[[yjcK]]'' {{PubMed|22383849}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjcK_1260811_1261356_-1 yjcK] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjcK_1260811_1261356_-1 yjcK] {{PubMed|22383849}} | ||
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** GP1246 (''yjcK''::''cat''), available in [[Jörg Stülke]]'s lab | ** GP1246 (''yjcK''::''cat''), available in [[Jörg Stülke]]'s lab | ||
** GP1255 (''[[acuA]]''::''kan'' ''[[yjcK]]''::''cat'' ''[[ynaD]]''::''spec'' ''[[yoaA]]''::''tet''), available in [[Jörg Stülke]]'s lab | ** GP1255 (''[[acuA]]''::''kan'' ''[[yjcK]]''::''cat'' ''[[ynaD]]''::''spec'' ''[[yoaA]]''::''tet''), available in [[Jörg Stülke]]'s lab | ||
| − | ** BP139 ('' | + | ** BP139 (''[[yjcL]]-[[yjcK]]''::''ermC''), available in [[Fabian Commichau]]'s lab |
* '''Expression vector:''' | * '''Expression vector:''' | ||
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=References= | =References= | ||
| − | <pubmed> 16479537 </pubmed> | + | <pubmed> 16479537 22383849</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 11:20, 9 August 2013
- Description: similar to ribosomal-protein-alanine N-acetyltransferase
| Gene name | yjcK |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: yjcK | |
| MW, pI | 20 kDa, 5.459 |
| Gene length, protein length | 543 bp, 181 aa |
| Immediate neighbours | metC, yjcL |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
translation, protein modification
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU11890
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Acetyl-CoA + ribosomal-protein L-alanine = CoA + ribosomal-protein N-acetyl-L-alanine (according to Swiss-Prot)
- Protein family: N-acetyltransferase domain (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cytoplasm (Homogeneous) PubMed
Database entries
- Structure:
- UniProt: O31633
- KEGG entry: [2]
- E.C. number: 2.3.1.128
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- GP1246 (yjcK::cat), available in Jörg Stülke's lab
- GP1255 (acuA::kan yjcK::cat ynaD::spec yoaA::tet), available in Jörg Stülke's lab
- BP139 (yjcL-yjcK::ermC), available in Fabian Commichau's lab
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849]
[WorldCat.org]
[DOI]
(I p)
Jean-Christophe Meile, Ling Juan Wu, S Dusko Ehrlich, Jeff Errington, Philippe Noirot
Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory.
Proteomics: 2006, 6(7);2135-46
[PubMed:16479537]
[WorldCat.org]
[DOI]
(P p)
