Difference between revisions of "GerW"

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* '''Description:''' sporulation protein <br/><br/>
+
* '''Description:''' [[germination]] protein, essential for [[germination]] in response to L-alanine <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || sporulation protein  
+
|style="background:#ABCDEF;" align="center"| '''Product''' || [[germination]] protein  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+
|style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]] in response to L-alanine
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU29500 ytfJ]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU29500 gerW]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 4.988   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 4.988   
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<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[sporulation proteins]]}}
+
{{SubtiWiki category|[[germination]]}}
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
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===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
 +
* no [[germination]] in response to l-alanine {{PubMed|23921501}}
  
 
=== Database entries ===
 
=== Database entries ===
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=== Additional information===
 
=== Additional information===
 
 
  
  
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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
+
* '''[[SubtInteract|Interactions]]:'''
  
* '''Localization:'''
+
* '''[[Localization]]:'''
  
 
=== Database entries ===
 
=== Database entries ===
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''[[ytfI]]-[[ytfJ]]'' {{PubMed|9387221}}
+
* '''Operon:''' ''[[ytfI]]-[[gerW]]'' {{PubMed|9387221}}
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytfJ_3018309_3018764_-1 ytfJ] {{PubMed|22383849}}
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytfJ_3018309_3018764_-1 gerW] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigF]] {{PubMed|16497325}}
+
* '''[[Sigma factor]]:''' [[SigF]] {{PubMed|23921501,16497325}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
** expressed early during sporulation in the forespore ([[SigF]]) {{PubMed|16497325}}
+
** expressed early during sporulation in the forespore ([[SigF]]) {{PubMed|23921501,16497325}}
 
** repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]   
 
** repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]   
  
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=References=
 
=References=
  
<pubmed>16497325,9387221,12107147, </pubmed>
+
<pubmed>16497325,9387221,12107147, 23921501 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:03, 8 August 2013

Gene name gerW
Synonyms ytfJ
Essential no
Product germination protein
Function germination in response to L-alanine
Gene expression levels in SubtiExpress: gerW
MW, pI 16 kDa, 4.988
Gene length, protein length 453 bp, 151 aa
Immediate neighbours tpx, ytfI
Sequences Protein DNA DNA_with_flanks
Genetic context
YtfJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YtfJ expression.png















Categories containing this gene/protein

germination

This gene is a member of the following regulons

SigF regulon

The gene

Basic information

  • Locus tag: BSU29500

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed early during sporulation in the forespore (SigF) PubMed
    • repressed by casamino acids PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References