Difference between revisions of "ArfM"

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Revision as of 14:50, 16 May 2013

  • Description: regulation of anaerobic genes

Gene name arfM
Synonyms ywiD
Essential no
Product unknown
Function regulation of anaerobic genes
Gene expression levels in SubtiExpress: arfM
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism, Stress
MW, pI 17 kDa, 5.842
Gene length, protein length 474 bp, 158 aa
Immediate neighbours narG, ywiC
Sequences Protein DNA DNA_with_flanks
Genetic context
ArfM context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
ArfM expression.png




























Categories containing this gene/protein

regulators of electron transport, transcription factors and their control

This gene is a member of the following regulons

Fnr regulon

The gene

Basic information

  • Locus tag: BSU37290

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed under anaerobic conditions (Fnr) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Heike Reents, Richard Münch, Thorben Dammeyer, Dieter Jahn, Elisabeth Härtig
The Fnr regulon of Bacillus subtilis.
J Bacteriol: 2006, 188(3);1103-12
[PubMed:16428414] [WorldCat.org] [DOI] (P p)

M Marino, H C Ramos, T Hoffmann, P Glaser, D Jahn
Modulation of anaerobic energy metabolism of Bacillus subtilis by arfM (ywiD).
J Bacteriol: 2001, 183(23);6815-21
[PubMed:11698370] [WorldCat.org] [DOI] (P p)

H Cruz Ramos, L Boursier, I Moszer, F Kunst, A Danchin, P Glaser
Anaerobic transcription activation in Bacillus subtilis: identification of distinct FNR-dependent and -independent regulatory mechanisms.
EMBO J: 1995, 14(23);5984-94
[PubMed:8846791] [WorldCat.org] [DOI] (P p)